Detail infomation of NONHSAG000478.2--NONCODE

An integrated knowledge database dedicated to ncRNAs, especially lncRNAs.

Detail infomation of NONHSAG000478.2

General info

NONCODE GENE ID	NONHSAG000478.2
Chromosome	chr1
Start Site	16520693
End Site	16521809
Strand	+
Length	583
Assembly	hg38
Class	Linc;
Other Gene Versions	NONHSAG000478.1(old version)

Transcripts in Gene

NONCODE TRANSCRIPT ID

NONHSAT148442.1

NONHSAT001132.2

NONHSAT001133.2

NONHSAT001134.2

Expression Profile (Data Source:Human Body Map)

adipose	adrenal	brain	brain_R	breast	colon
0	0	0	0	0	0
foreskin	heart	heart_R	HLF_1	HLF_2	kidney
0	0.0223269	0	0	0.0397431	0.0225583
liver	liver_R	lung	lymphNode	ovary	placenta_R
0	0	0	0	0	0
prostate	skeltalMuscle	testes	testes_R	thyroid	whiteBloodCell
0	0	0	0	0	0

Expression profile of NONHSAG000478 in Human tissues

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Exosome Expression Profile (Data Source: NCBI GEO)

A431_cellLine (Squamous Cell Carcinoma Cell Line Exosomes)	BJ_cellLine (Foreskin Fibroblast Cell Line Exosomes)	HepG2_cellLine (Hepatocellular Carcinoma Cell Line Exosomes)	HUVEC_cellLine (Human Umbilical Vein Endothelial Cell Line Exosomes)	invasive_NFPAs (Invasive Non-functional Pituitary Adenomas Exosomes)
0	0.248248	4.30042	2.62073	10.066
non-invasive_NFPAs (Non-invasive Non-functional Pituitary Adenomas Exosomes)	MCF7_cellLine (Human Breast Cancer Cell Line Exosomes)	MDA-MB-231_cellLine (Human Breast Cancer Cell Line Exosomes)	tuberculosis_patients_serum (Active Tuberculosis Patients Serum Exosomes)	normal_people_blood (Normal People Blood Exosomes)
9.68549	0	0	14.3378	0

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Expression Profile (Data Source: Single Cell)

Conservation Info

Chordata
- Vertebrates
  - Manmals
    - Primates
      - Human
      - Chimp : N/A
      - Gorilla : N/A
      - Orangutan : chr1( len:1114 )
      - Rhesus : chr1( len:1082 )^T
    - Rodents
      - Mouse : N/A
      - Rat : N/A
    - Laurasiatheria
      - Pig : N/A
      - Cow : N/A
    - Opossum : N/A
    - Platypus : N/A
  - Birds
    - Chicken : N/A
- Actinopteryqii
  - Zebrafish : N/A

Note: T = There are transcripts in this region.

Disease related

Disease:

NONCODE ID	Gene Symbol	Disease name	Source Database	Source PMID
NONHSAG000478.2	lnc-AL355149.1-1	tongue squamous cell carcinoma	Lnc2Cancer	25045670
NONHSAG000478.2	lnc-AL355149.1-1	nasopharynx carcinoma	Lnc2Cancer	24822202
NONHSAG000478.2	lnc-AL355149.1-1	nasopharyngeal carcinoma	Lnc2Cancer	24822202
NONHSAG000478.2	lnc-AL355149.1-1	nasopharyngeal carcinoma	LncRNADisease	24822202

Mutations:

NONCODE ID	SNP ID	GWAS trait	Source PMID
NONHSAG000478.2	rs277462	Serum ratio of (phenylacetylglutamine)/(quinate)	21886157

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