Detail infomation of NONHSAG000835.3--NONCODE

An integrated knowledge database dedicated to ncRNAs, especially lncRNAs.

Detail infomation of NONHSAG000835.3

General info

NONCODE GENE ID	NONHSAG000835.3
Chromosome	chr1
Start Site	28505942
End Site	28510892
Strand	+
Length	4123
Assembly	hg38
Class	Exonic;
Other Gene Versions	NONHSAG000835.2(old version)

Transcripts in Gene

NONCODE TRANSCRIPT ID

NONHSAT224840.1

NONHSAT224841.1

NONHSAT001952.2

NONHSAT001953.2

NONHSAT001955.2

Expression Profile (Data Source:Human Body Map)

adipose	adrenal	brain	brain_R	breast	colon
0.0031664	0.0286589	0.0265533	0.0790632	0.000706009	0
foreskin	heart	heart_R	HLF_1	HLF_2	kidney
0.00838948	0.00470939	6.91408e-09	0	1.54215e-09	0.0388557
liver	liver_R	lung	lymphNode	ovary	placenta_R
8.94127e-10	0	0.00248654	1.2667e-09	0.00595604	0.00253379
prostate	skeltalMuscle	testes	testes_R	thyroid	whiteBloodCell
1.26848e-09	0	0.00736553	0.0605927	0.0494958	0.00342683

Expression profile of NONHSAG000835 in Human tissues

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Exosome Expression Profile (Data Source: NCBI GEO)

A431_cellLine (Squamous Cell Carcinoma Cell Line Exosomes)	BJ_cellLine (Foreskin Fibroblast Cell Line Exosomes)	HepG2_cellLine (Hepatocellular Carcinoma Cell Line Exosomes)	HUVEC_cellLine (Human Umbilical Vein Endothelial Cell Line Exosomes)	invasive_NFPAs (Invasive Non-functional Pituitary Adenomas Exosomes)
771.487	72.6971	97.3805	96.2129	7.94089
non-invasive_NFPAs (Non-invasive Non-functional Pituitary Adenomas Exosomes)	MCF7_cellLine (Human Breast Cancer Cell Line Exosomes)	MDA-MB-231_cellLine (Human Breast Cancer Cell Line Exosomes)	tuberculosis_patients_serum (Active Tuberculosis Patients Serum Exosomes)	normal_people_blood (Normal People Blood Exosomes)
7.35808	0	0	2.81355	8.70421

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Expression Profile (Data Source: Single Cell)

Conservation Info

Chordata
- Vertebrates
  - Manmals
    - Primates
      - Human
      - Chimp : N/A
      - Gorilla : N/A
      - Orangutan : N/A
      - Rhesus : N/A
    - Rodents
      - Mouse : N/A
      - Rat : N/A
    - Laurasiatheria
      - Pig : N/A
      - Cow : N/A
    - Opossum : N/A
    - Platypus : N/A
  - Birds
    - Chicken : N/A
- Actinopteryqii
  - Zebrafish : N/A

Note: T = There are transcripts in this region.

Disease related

Disease:

NONCODE ID	Gene Symbol	Disease name	Source Database	Source PMID
NONHSAG000835.3	SNHG3	Alzheimer's disease	LncRNAWiki	0
NONHSAG000835.3	SNHG3	Alzheimer's disease	LncRNADisease	21961160
NONHSAG000835.3	SNHG3	hepatocellular carcinoma	Lnc2Cancer	26373735

Mutations:

NONCODE ID	SNP ID	GWAS trait	Source PMID
NONHSAG000835.3	rs2840757	Gene expression of PHACTR4 in peripheral blood monocytes	20502693
NONHSAG000835.3	rs2840757	Gene expression of PHACTR4 in Cerebellum	20485568
NONHSAG000835.3	rs2840757	Gene expression of RCC1 in peripheral blood monocytes	20502693
NONHSAG000835.3	rs2840757	Serum concentration of 2-hydroxybutyrate (AHB)	21886157
NONHSAG000835.3	rs2840758	Gene expression of PHACTR4 in Cerebellum	20485568
NONHSAG000835.3	rs2840758	Gene expression of PHACTR4 (probeID ILMN_1736548) in cerebellum in Alzheimer's disease cases and controls	22685416
NONHSAG000835.3	rs2840758	Gene expression of ATPIF1 in Caudal pons	20485568
NONHSAG000835.3	rs2840758	Gene expression of PHACTR4 (probeID ILMN_1736548) in temporal cortex in Alzheimer's disease cases and controls	22685416

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