Detail infomation of NONHSAG000840.3--NONCODE

An integrated knowledge database dedicated to ncRNAs, especially lncRNAs.

Detail infomation of NONHSAG000840.3

General info

NONCODE GENE ID	NONHSAG000840.3
Chromosome	chr1
Start Site	28573544
End Site	28582983
Strand	-
Length	8370
Assembly	hg38
Class	Antisense;
Other Gene Versions	NONHSAG000840.2(old version)

Transcripts in Gene

NONCODE TRANSCRIPT ID

NONHSAT151327.1

NONHSAT226500.1

NONHSAT226501.1

NONHSAT001967.2

NONHSAT001968.2

NONHSAT001969.2

NONHSAT001970.2

NONHSAT001971.2

NONHSAT001972.2

NONHSAT001973.2

NONHSAT001974.2

NONHSAT001975.2

NONHSAT001976.2

NONHSAT001981.2

Expression Profile (Data Source:Human Body Map)

adipose	adrenal	brain	brain_R	breast	colon
0.00333127	0.000953049	0.00408002	0.00537518	0	0.00654456
foreskin	heart	heart_R	HLF_1	HLF_2	kidney
0.00803337	0.00056787	0.00665017	0.00646398	0.0259565	0.00203445
liver	liver_R	lung	lymphNode	ovary	placenta_R
0.000255578	0	0.00427494	0.01929	0.00171241	0.00950671
prostate	skeltalMuscle	testes	testes_R	thyroid	whiteBloodCell
0.00301868	0	0.024991	0.0473097	0.00230644	0.00254644

Expression profile of NONHSAG000840 in Human tissues

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Exosome Expression Profile (Data Source: NCBI GEO)

A431_cellLine (Squamous Cell Carcinoma Cell Line Exosomes)	BJ_cellLine (Foreskin Fibroblast Cell Line Exosomes)	HepG2_cellLine (Hepatocellular Carcinoma Cell Line Exosomes)	HUVEC_cellLine (Human Umbilical Vein Endothelial Cell Line Exosomes)	invasive_NFPAs (Invasive Non-functional Pituitary Adenomas Exosomes)
140.471	28.8628	4.04261	29.2879	7.21731
non-invasive_NFPAs (Non-invasive Non-functional Pituitary Adenomas Exosomes)	MCF7_cellLine (Human Breast Cancer Cell Line Exosomes)	MDA-MB-231_cellLine (Human Breast Cancer Cell Line Exosomes)	tuberculosis_patients_serum (Active Tuberculosis Patients Serum Exosomes)	normal_people_blood (Normal People Blood Exosomes)
6.7851	0	0	4.6048	2.13033

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Expression Profile (Data Source: Single Cell)

Conservation Info

Chordata
- Vertebrates
  - Manmals
    - Primates
      - Human
      - Chimp : N/A
      - Gorilla : N/A
      - Orangutan : N/A
      - Rhesus : N/A
    - Rodents
      - Mouse : N/A
      - Rat : N/A
    - Laurasiatheria
      - Pig : N/A
      - Cow : N/A
    - Opossum : N/A
    - Platypus : N/A
  - Birds
    - Chicken : N/A
- Actinopteryqii
  - Zebrafish : N/A

Note: T = There are transcripts in this region.

Disease related

Disease:

NONCODE ID	Gene Symbol	Disease name	Source Database	Source PMID
NONHSAG000840.3	SNHG12	endometrial carcinoma	Lnc2Cancer	25695231
NONHSAG000840.3	SNHG12	osteosarcoma	LncRNAWiki	0

Mutations:

NONCODE ID	SNP ID	GWAS trait	Source PMID
NONHSAG000840.3	rs9426442	Gene expression of PHACTR4 in blood	21829388
NONHSAG000840.3	rs9426442	Gene expression of PHACTR4 in Cerebellum	20485568
NONHSAG000840.3	rs9426442	Gene expression of ATPIF1 in Caudal pons	20485568
NONHSAG000840.3	rs9426442	Gene expression of ATPIF1 in Temporal cortex	20485568
NONHSAG000840.3	rs9426442	Serum ratio of (taurocholate)/(taurolithocholate 3-sulfate)	21886157
NONHSAG000840.3	rs1342086	Gene expression of PHACTR4 in peripheral blood monocytes	20502693
NONHSAG000840.3	rs1342086	Gene expression of PHACTR4 in Cerebellum	20485568
NONHSAG000840.3	rs1342086	Gene expression of ATPIF1 in Caudal pons	20485568
NONHSAG000840.3	rs1342086	Gene expression of ATPIF1 in Temporal cortex	20485568
NONHSAG000840.3	rs1342086	Gene expression of RCC1 in peripheral blood monocytes	20502693
NONHSAG000840.3	rs1342086	Gene expression of FLJ13171 in YRI lymphoblastoid cell lines	17873874
NONHSAG000840.3	rs1342086	Serum ratio of (docosapentaenoate (n3 DPA; 22:5n3))/(eicosapentaenoate (EPA; 20:5n3))	21886157

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