An integrated knowledge database dedicated to ncRNAs, especially lncRNAs.
Detail infomation of NONHSAG001989.1

General info

NONCODE GENE IDNONHSAG001989.1
Chromosomechr1
Start Site87510618
End Site87511554
Strand-
Length936
Assemblyhg19
ClassAntisense;
Other Gene VersionsNONHSAG001989.2

Transcripts in Gene

NONCODE TRANSCRIPT ID
NONHSAT004280.1

Expression Profile (Data Source:)

adiposeadrenalbrainbrain_Rbreastcolon
foreskinheartheart_RHLF_1HLF_2kidney
liverliver_RlunglymphNodeovaryplacenta_R
prostateskeltalMuscletestestestes_RthyroidwhiteBloodCell
NA

Exosome Expression Profile (Data Source: NCBI GEO)

NA

Expression Profile (Data Source: Single Cell)

Conservation Info

  • Chordata
    • Vertebrates
      • Manmals
        • Primates
          • Human
          • Chimp : N/A
          • Gorilla : N/A
          • Orangutan : N/A
          • Rhesus : N/A
        • Rodents
          • Mouse : N/A
          • Rat : N/A
        • Laurasiatheria
          • Pig : N/A
          • Cow : N/A
        • Opossum : N/A
        • Platypus : N/A
      • Birds
        • Chicken : N/A
    • Actinopteryqii
      • Zebrafish : N/A

Note: T = There are transcripts in this region.

Disease related

Disease:

NONCODE IDGene SymbolDisease nameSource DatabaseSource PMID

Mutations:

NONCODE IDSNP IDGWAS traitSource PMID
NONHSAG001989.2rs7534656Gene expression of SEP15 in normal prepouch ileum23474282
NONHSAG001989.2rs7534656Gene expression of 40801 in peripheral blood monocytes20502693
NONHSAG001989.2rs7534656Serum concentration of 5-oxoproline21886157

Potential Function

GO NumberDescription
GO:1901652response to peptide
GO:0016485protein processing
GO:1902476chloride transmembrane transport
GO:0006821chloride transport
GO:0000122negative regulation of transcription from RNA polymerase II promoter
GO:0006936muscle contraction
GO:0007249I-kappaB kinase/NF-kappaB signaling
GO:0060009Sertoli cell development
GO:0051384response to glucocorticoid
GO:0007200phospholipase C-activating G-protein coupled receptor signaling pathway

  NONCODE

Introduce of NONCODE
Browse NONCODE
Search a gene/transcript
Statistics
Blast
Genome
ID Conversion
Download

  Bio-tools

ncFANs
CNCI
lnc-GFP
lncRNA Analysis pipeline