Detail infomation of NONHSAG002460.3--NONCODE

Detail infomation of NONHSAG002460.3

General info

NONCODE GENE ID	NONHSAG002460.3
Chromosome	chr1
Start Site	112956414
End Site	113047056
Strand	+
Length	17500
Assembly	hg38
Class	Linc;
Other Gene Versions	NONHSAG002460.2(old version)

Transcripts in Gene

NONCODE TRANSCRIPT ID

Expression Profile (Data Source:Human Body Map)

adipose	adrenal	brain	brain_R	breast	colon
0.624943	0.29308	0.2935	0.295177	0.28883	0.230069
foreskin	heart	heart_R	HLF_1	HLF_2	kidney
0.506577	0.178783	0.0917646	0.299502	0.63325	0.358855
liver	liver_R	lung	lymphNode	ovary	placenta_R
0.0604615	0.0511513	0.700787	0.317286	0.347728	0.381159
prostate	skeltalMuscle	testes	testes_R	thyroid	whiteBloodCell
0.50371	0.129063	0.222707	0.180386	0.201989	0.0554558

Expression profile of NONHSAG002460 in Human tissues

Exosome Expression Profile (Data Source: NCBI GEO)

A431_cellLine (Squamous Cell Carcinoma Cell Line Exosomes)	BJ_cellLine (Foreskin Fibroblast Cell Line Exosomes)	HepG2_cellLine (Hepatocellular Carcinoma Cell Line Exosomes)	HUVEC_cellLine (Human Umbilical Vein Endothelial Cell Line Exosomes)	invasive_NFPAs (Invasive Non-functional Pituitary Adenomas Exosomes)
2.51162	8.22208	2.40619	4.94074	5.23011
non-invasive_NFPAs (Non-invasive Non-functional Pituitary Adenomas Exosomes)	MCF7_cellLine (Human Breast Cancer Cell Line Exosomes)	MDA-MB-231_cellLine (Human Breast Cancer Cell Line Exosomes)	tuberculosis_patients_serum (Active Tuberculosis Patients Serum Exosomes)	normal_people_blood (Normal People Blood Exosomes)
4.43375	0	0	4.13988	0.0614545

Expression Profile (Data Source: Single Cell)

Conservation Info

Chordata
- Vertebrates
  - Manmals
    - Primates
      - Human
      - Chimp : N/A
      - Gorilla : N/A
      - Orangutan : N/A
      - Rhesus : N/A
    - Rodents
      - Mouse : N/A
      - Rat : N/A
    - Laurasiatheria
      - Pig : N/A
      - Cow : N/A
    - Opossum : N/A
    - Platypus : N/A
  - Birds
    - Chicken : N/A
- Actinopteryqii
  - Zebrafish : N/A

Note: T = There are transcripts in this region.

Disease related

Disease:

NONCODE ID	Gene Symbol	Disease name	Source Database	Source PMID
NONHSAG002460.3	ENST00000420168	cervical cancer	Lnc2Cancer	27363024
NONHSAG002460.3	SLC16A1-AS1	cervical cancer	Lnc2Cancer	27363024

Mutations:

NONCODE ID	SNP ID	GWAS trait	Source PMID
NONHSAG002460.3	rs4839273	Total cholesterol	20339536
NONHSAG002460.3	rs7524567	Serum ratio of (gamma-glutamylglutamate)/(inositol 1-phosphate (I1P))	21886157
NONHSAG002460.3	rs17493859	Refractive error	23474815
NONHSAG002460.3	rs773440	Serum concentration of ascorbate (Vitamin C)	21886157
NONHSAG002460.3	rs773440	Serum concentration of glutaroyl carnitine	21886157
NONHSAG002460.3	rs7545814	Serum ratio of (1,5-anhydroglucitol (1,5-AG))/(gamma-glutamylglutamate)	21886157
NONHSAG002460.3	rs1216779	Serum ratio of (levulinate (4-oxovalerate))/(phenylacetate)	21886157
NONHSAG002460.3	rs12129863	Serum concentration of ascorbate (Vitamin C)	21886157
NONHSAG002460.3	rs12129863	Total cholesterol	20339536
NONHSAG002460.3	rs11102576	Total cholesterol	20339536
NONHSAG002460.3	rs11584535	Total cholesterol	20339536
NONHSAG002460.3	rs2798691	Serum ratio of (glutaroyl carnitine)/(kynurenine)	21886157
NONHSAG002460.3	rs12745675	Total cholesterol	20339536
NONHSAG002460.3	rs12746771	Total cholesterol	20339536
NONHSAG002460.3	rs3889656	Total cholesterol	20339536

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