Detail infomation of NONHSAG002949.1--NONCODE

Detail infomation of NONHSAG002949.1

General info

NONCODE GENE ID	NONHSAG002949.1
Chromosome	chr1
Start Site	152177537
End Site	152179658
Strand	+
Length	1338
Assembly	hg19
Class	Antisense;
Other Gene Versions	NONHSAG002949.3

Transcripts in Gene

NONCODE TRANSCRIPT ID

NONHSAT006473.1

NONHSAT006474.1

Expression Profile (Data Source:)

adipose	adrenal	brain	brain_R	breast	colon

foreskin	heart	heart_R	HLF_1	HLF_2	kidney

liver	liver_R	lung	lymphNode	ovary	placenta_R

prostate	skeltalMuscle	testes	testes_R	thyroid	whiteBloodCell

Exosome Expression Profile (Data Source: NCBI GEO)

Expression Profile (Data Source: Single Cell)

Conservation Info

Chordata
- Vertebrates
  - Manmals
    - Primates
      - Human
      - Chimp : N/A
      - Gorilla : N/A
      - Orangutan : N/A
      - Rhesus : N/A
    - Rodents
      - Mouse : N/A
      - Rat : N/A
    - Laurasiatheria
      - Pig : N/A
      - Cow : N/A
    - Opossum : N/A
    - Platypus : N/A
  - Birds
    - Chicken : N/A
- Actinopteryqii
  - Zebrafish : N/A

Note: T = There are transcripts in this region.

Disease related

Disease:

NONCODE ID	Gene Symbol	Disease name	Source Database	Source PMID
NONHSAG002949.3	lnc-LCE5A-1	laryngeal cancer	Lnc2Cancer	25904139
NONHSAG002949.3	lnc-LCE5A-1	pharyngeal cancer	Lnc2Cancer	25904139
NONHSAG002949.3	lnc-LCE5A-1	tongue cancer	Lnc2Cancer	25904139

Mutations:

NONCODE ID	SNP ID	GWAS trait	Source PMID
NONHSAG002949.3	rs4845420	2 hour glucose	20081857
NONHSAG002949.3	rs4579760	2 hour glucose	20081857
NONHSAG002949.3	rs924087	Gene expression of S100A10 in CEU-CHB-JPT-YRI lymphoblastoid cell lines	17873874
NONHSAG002949.3	rs924087	2 hour glucose	20081857
NONHSAG002949.3	rs924088	Total cholesterol	20339536
NONHSAG002949.3	rs924088	HDL cholesterol	20339536
NONHSAG002949.3	rs17648141	Methylation levels at chr1:150565458-150565508 [hg18 coord, probe cg13447818] in Caudal pons	20485568
NONHSAG002949.3	rs17648141	Methylation levels at chr1:150565458-150565508 [hg18 coord, probe cg13447818] in Frontal cortex	20485568
NONHSAG002949.3	rs969359	Crohn's disease, combined control dataset	17554300
NONHSAG002949.3	rs969359	Multiple complex diseases	17554300
NONHSAG002949.3	rs12033248	Methylation levels at chr1:150565458-150565508 [hg18 coord, probe cg13447818] in Temporal cortex	20485568
NONHSAG002949.3	rs6667458	Serum concentration of arachidonate (20:4n6)	21886157
NONHSAG002949.3	rs6667458	Serum concentration of deoxycholate	21886157
NONHSAG002949.3	rs1496042	Methylation levels at chr1:150565458-150565508 [hg18 coord, probe cg13447818] in Temporal cortex	20485568
NONHSAG002949.3	rs1496042	Gene expression of MTMR11 in liver	18462017
NONHSAG002949.3	rs1496042	Serum ratio of (arachidonate (20:4n6))/(caprylate (8:0))	21886157
NONHSAG002949.3	rs1496042	Gene expression of S100A10 in blood	21829388
NONHSAG002949.3	rs10749668	Multiple sclerosis (females)	19010793
NONHSAG002949.3	rs10749668	Serum ratio of (gamma-glutamylisoleucine*)/(stearidonate (18:4n3))	21886157
NONHSAG002949.3	rs10788823	Methylation levels at chr1:150565702-150565752 [hg18 coord, probe cg26390526] in Temporal cortex	20485568
NONHSAG002949.3	rs10788823	Birth weight	23202124
NONHSAG002949.3	rs12130219	Differential exon level expression of LOC339400 [probeset 2359264] in brain cortex	19222302
NONHSAG002949.3	rs12130219	Gene expression of LOC339400 [transcript ID 2359243] in brain cortex	19222302
NONHSAG002949.3	rs12130219	HDL cholesterol	19060906
NONHSAG002949.3	rs4845733	Serum ratio of (bilirubin (E,E)*)/(cysteine-glutathione disulfide)	21886157
NONHSAG002949.3	rs11590365	Serum ratio of (bilirubin (E,E)*)/(cysteine-glutathione disulfide)	21886157
NONHSAG002949.3	rs1552991	Gene expression of AK056431 in liver	18462017
NONHSAG002949.3	rs1552991	Methylation levels at chr1:150565458-150565508 [hg18 coord, probe cg13447818] in Temporal cortex	20485568
NONHSAG002949.3	rs1552991	Methylation levels at chr1:150565458-150565508 [hg18 coord, probe cg13447818] in Frontal cortex	20485568
NONHSAG002949.3	rs1552991	Gene expression of S100A10 in blood	21829388
NONHSAG002949.3	rs10749669	Serum ratio of (1,6-anhydroglucose)/(cysteine-glutathione disulfide)	21886157
NONHSAG002949.3	rs877776	Atopic dermatitis	19349984
NONHSAG002949.3	rs4845741	Serum ratio of (homocitrulline)/(pantothenate)	21886157
NONHSAG002949.3	rs4845742	Serum ratio of (homocitrulline)/(pantothenate)	21886157
NONHSAG002949.3	rs4845743	Methylation levels at chr1:150565458-150565508 [hg18 coord, probe cg13447818] in Temporal cortex	20485568
NONHSAG002949.3	rs4845743	Methylation levels at chr1:150565458-150565508 [hg18 coord, probe cg13447818] in Frontal cortex	20485568
NONHSAG002949.3	rs4845743	Serum ratio of (glycylvaline)/(homocitrulline)	21886157
NONHSAG002949.3	rs4845423	Serum ratio of (homocitrulline)/(pantothenate)	21886157
NONHSAG002949.3	rs10888470	Serum ratio of (bilirubin (E,E)*)/(cysteine-glutathione disulfide)	21886157
NONHSAG002949.3	rs4845750	Serum ratio of (1,6-anhydroglucose)/(cysteine-glutathione disulfide)	21886157
NONHSAG002949.3	rs11581805	Serum ratio of (pentadecanoate (15:0))/(scyllo-inositol)	21886157
NONHSAG002949.3	rs12032307	Methylation levels at chr1:150565458-150565508 [hg18 coord, probe cg13447818] in Temporal cortex	20485568
NONHSAG002949.3	rs12032307	Methylation levels at chr1:150565458-150565508 [hg18 coord, probe cg13447818] in Frontal cortex	20485568
NONHSAG002949.3	rs12032307	Methylation levels at chr1:150565702-150565752 [hg18 coord, probe cg26390526] in Cerebellum	20485568
NONHSAG002949.3	rs17596572	Methylation levels at chr1:150565458-150565508 [hg18 coord, probe cg13447818] in Temporal cortex	20485568
NONHSAG002949.3	rs17596572	Methylation levels at chr1:150565458-150565508 [hg18 coord, probe cg13447818] in Frontal cortex	20485568
NONHSAG002949.3	rs17596572	Methylation levels at chr1:150565702-150565752 [hg18 coord, probe cg26390526] in Cerebellum	20485568
NONHSAG002949.3	rs12030180	Serum ratio of (glycerol)/(myristoleate (14:1n5))	21886157
NONHSAG002949.3	rs2338430	Urinary albumin-to-creatinine ratio	21355061
NONHSAG002949.3	rs2132418	Urinary albumin-to-creatinine ratio	21355061
NONHSAG002949.3	rs11204947	Urinary albumin-to-creatinine ratio	21355061
NONHSAG002949.3	rs12030667	Serum ratio of (1-eicosadienoylglycerophosphocholine*)/(palmitoylcarnitine)	21886157
NONHSAG002949.3	rs11204949	Serum ratio of (1-methylurate)/(trans-4-hydroxyproline)	21886157
NONHSAG002949.3	rs10888473	Serum ratio of (bilirubin (E,E)*)/(cysteine-glutathione disulfide)	21886157
NONHSAG002949.3	rs6587655	Serum creatinine	20383146
NONHSAG002949.3	rs7537633	Urinary albumin-to-creatinine ratio	21355061
NONHSAG002949.3	rs4326625	Urinary albumin-to-creatinine ratio	21355061
NONHSAG002949.3	rs7527318	Insulin resistance	21901158
NONHSAG002949.3	rs7527318	HOMA-IR	21901158
NONHSAG002949.3	rs7527318	Fasting insulin	21901158
NONHSAG002949.3	rs7541297	Insulin resistance	21901158
NONHSAG002949.3	rs7541297	HOMA-IR	21901158
NONHSAG002949.3	rs7541297	Fasting insulin	21901158
NONHSAG002949.3	rs10888475	Urinary albumin-to-creatinine ratio	21355061
NONHSAG002949.3	rs10443208	HDL cholesterol	19060906
NONHSAG002949.3	rs4845431	Serum ratio of (1-linoleoylglycerol (1-monolinolein))/(cholate)	21886157
NONHSAG002949.3	rs12728907	Multiple sclerosis (females)	19010793
NONHSAG002949.3	rs11204971	Atopic dermatitis	21666691
NONHSAG002949.3	rs11204971	Atopic dermatitis	21666691
NONHSAG002949.3	rs11204971	Serum ratio of (1-methylurate)/(trans-4-hydroxyproline)	21886157
NONHSAG002949.3	rs2152862	Serum ratio of (bilirubin (E,E)*)/(cysteine-glutathione disulfide)	21886157
NONHSAG002949.3	rs56205414	Multiple myeloma	22120009
NONHSAG002949.3	rs2184951	Urinary albumin-to-creatinine ratio	21355061
NONHSAG002949.3	rs11204976	Urinary albumin-to-creatinine ratio	21355061
NONHSAG002949.3	rs12405278	Serum ratio of (homocitrulline)/(octadecanedioate)	21886157
NONHSAG002949.3	rs11204980	Urinary albumin-to-creatinine ratio	21355061
NONHSAG002949.3	rs6587666	Urinary albumin-to-creatinine ratio	21355061
NONHSAG002949.3	rs3126085	Atopic dermatitis	21666691
NONHSAG002949.3	rs3126085	Atopic dermatitis	21666691
NONHSAG002949.3	rs3126085	Methylation levels at chr11:32409347-32409397 [hg18 coord, probe cg22533573] in Caudal pons	20485568
NONHSAG002949.3	rs1933063	Gene expression of ENOPH1 in peripheral blood monocytes	20502693
NONHSAG002949.3	rs1933063	Adiponectin levels	22479202
NONHSAG002949.3	rs1858480	Urinary albumin-to-creatinine ratio	21355061
NONHSAG002949.3	rs3126091	Urinary albumin-to-creatinine ratio	21355061
NONHSAG002949.3	rs1858483	Hair morphology	19896111
NONHSAG002949.3	rs1858483	Serum ratio of (gamma-glutamylglutamate)/(piperine)	21886157
NONHSAG002949.3	rs2050631	Serum concentration of 2-tetradecenoyl carnitine	21886157
NONHSAG002949.3	rs3120665	Cloninger?s temperament scales (Novelty seeking)	20691247
NONHSAG002949.3	rs3120667	14-Item case/control for disordered eating behaviors	23568457
NONHSAG002949.3	rs3120667	Eating disorders	23568457
NONHSAG002949.3	rs2065954	Serum concentration of hexadecanedioate	21886157
NONHSAG002949.3	rs11204982	Serum concentration of arachidonate (20:4n6)	21886157
NONHSAG002949.3	rs2282302	Gene expression of PGLYRP4 [probe 220944_at] in prefrontal cortex	20351726
NONHSAG002949.3	rs2282302	HDL cholesterol	19060906
NONHSAG002949.3	rs3818831	Serum concentration of hexadecanedioate	21886157
NONHSAG002949.3	rs11204985	Serum ratio of (3-methylxanthine)/(pyroglutamylglycine)	21886157
NONHSAG002949.3	rs6668764	Serum ratio of (1-linoleoylglycerol (1-monolinolein))/(cholate)	21886157
NONHSAG002949.3	rs10888484	Gene expression of UNG2 in peripheral blood monocytes	20502693
NONHSAG002949.3	rs1923504	Monocyte count	21738479
NONHSAG002949.3	rs10888485	Monocyte count	21738479
NONHSAG002949.3	rs16834014	Serum ratio of (3-methylxanthine)/(pyroglutamylglycine)	21886157
NONHSAG002949.3	rs11204998	Serum ratio of (1,6-anhydroglucose)/(cysteine-glutathione disulfide)	21886157
NONHSAG002949.3	rs12407319	Serum ratio of (ornithine)/(tetradecanedioate)	21886157
NONHSAG002949.3	rs4378206	Serum ratio of (3-methylxanthine)/(pyroglutamylglycine)	21886157
NONHSAG002949.3	rs7515448	Serum ratio of (ornithine)/(tetradecanedioate)	21886157
NONHSAG002949.3	rs3829868	Serum ratio of (4-acetamidobutanoate)/(valerate)	21886157
NONHSAG002949.3	rs4845763	Serum concentration of urate	21886157
NONHSAG002949.3	rs2146114	Diabetic nephropathy in type 2 diabetes mellitus - end stage renal disease	21150874
NONHSAG002949.3	rs10494275	Serum ratio of (1-palmitoylglycerophosphoinositol*)/(3-hydroxy-2-ethylpropionate)	21886157
NONHSAG002949.3	rs10494275	Serum concentration of dehydroisoandrosterone sulfate (DHEA-S)	21886157
NONHSAG002949.3	rs2146121	Serum ratio of (arabinose)/(pyroglutamine*)	21886157
NONHSAG002949.3	rs726863	Serum concentration of bilirubin (Z,Z)	21886157
NONHSAG002949.3	rs10888488	Serum ratio of (arabinose)/(pyroglutamine*)	21886157
NONHSAG002949.3	rs1923501	Total cholesterol	20339536
NONHSAG002949.3	rs11579266	Serum ratio of (homocitrulline)/(octadecanedioate)	21886157
NONHSAG002949.3	rs11579266	Gene expression of LCE2C [probe ILMN_7772] in osteoblasts treated with BMP2	21283786
NONHSAG002949.3	rs11579266	Total cholesterol	20339536
NONHSAG002949.3	rs11577946	Total cholesterol	20339536
NONHSAG002949.3	rs4845769	Autism	20663923
NONHSAG002949.3	rs2146117	1,6-Anhydro-beta-D-glucose:Creatinine	21572414
NONHSAG002949.3	rs2146117	Total cholesterol	20339536

NONCODE

Introduce of NONCODE

Browse NONCODE

Search a gene/transcript

Statistics

Blast

Genome

ID Conversion

Download

Bio-tools

ncFANs

CNCI

lnc-GFP

lncRNA Analysis pipeline