Detail infomation of NONHSAG002960.2--NONCODE

An integrated knowledge database dedicated to ncRNAs, especially lncRNAs.

Detail infomation of NONHSAG002960.2

General info

NONCODE GENE ID	NONHSAG002960.2
Chromosome	chr1
Start Site	152930039
End Site	152949211
Strand	-
Length	1999
Assembly	hg38
Class	Linc;
Other Gene Versions	NONHSAG002960.1(old version)

Transcripts in Gene

NONCODE TRANSCRIPT ID

NONHSAT152314.1

NONHSAT006498.2

Expression Profile (Data Source:Human Body Map)

adipose	adrenal	brain	brain_R	breast	colon
0	0	0	0	0	0
foreskin	heart	heart_R	HLF_1	HLF_2	kidney
0	0	0	0	0	0
liver	liver_R	lung	lymphNode	ovary	placenta_R
0	0	0	0	0	0
prostate	skeltalMuscle	testes	testes_R	thyroid	whiteBloodCell
0	0	0	0.0210745	0	0

Expression profile of NONHSAG002960 in Human tissues

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Exosome Expression Profile (Data Source: NCBI GEO)

A431_cellLine (Squamous Cell Carcinoma Cell Line Exosomes)	BJ_cellLine (Foreskin Fibroblast Cell Line Exosomes)	HepG2_cellLine (Hepatocellular Carcinoma Cell Line Exosomes)	HUVEC_cellLine (Human Umbilical Vein Endothelial Cell Line Exosomes)	invasive_NFPAs (Invasive Non-functional Pituitary Adenomas Exosomes)
0	0	1.2542	0	2.52564
non-invasive_NFPAs (Non-invasive Non-functional Pituitary Adenomas Exosomes)	MCF7_cellLine (Human Breast Cancer Cell Line Exosomes)	MDA-MB-231_cellLine (Human Breast Cancer Cell Line Exosomes)	tuberculosis_patients_serum (Active Tuberculosis Patients Serum Exosomes)	normal_people_blood (Normal People Blood Exosomes)
2.31441	0	0	4.64994	0

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Expression Profile (Data Source: Single Cell)

Conservation Info

Chordata
- Vertebrates
  - Manmals
    - Primates
      - Human
      - Chimp : chr1( len:20081 )
      - Gorilla : N/A
      - Orangutan : chr1( len:15622 )^T
      - Rhesus : N/A
    - Rodents
      - Mouse : N/A
      - Rat : N/A
    - Laurasiatheria
      - Pig : N/A
      - Cow : N/A
    - Opossum : N/A
    - Platypus : N/A
  - Birds
    - Chicken : N/A
- Actinopteryqii
  - Zebrafish : N/A

Note: T = There are transcripts in this region.

Disease related

Disease:

NONCODE ID	Gene Symbol	Disease name	Source Database	Source PMID
NONHSAG002960.2	lnc-SPRR2D-1	tongue squamous cell carcinoma	Lnc2Cancer	25045670

Mutations:

NONCODE ID	SNP ID	GWAS trait	Source PMID
NONHSAG002960.2	rs4845497	Advanced age-related macular degeneration (choroidal neovascularization) vs. no AMD	23455636
NONHSAG002960.2	rs4845497	Autism	20663923
NONHSAG002960.2	rs1999885	Breast cancer	20852631
NONHSAG002960.2	rs756303	Serum ratio of (1-heptadecanoylglycerophosphocholine)/(7-methylxanthine)	21886157
NONHSAG002960.2	rs756303	Autism	20663923
NONHSAG002960.2	rs2050674	Serum ratio of (sebacate (decanedioate))/(thromboxane B2)	21886157
NONHSAG002960.2	rs2050674	Advanced age-related macular degeneration (choroidal neovascularization) vs. no AMD	23455636
NONHSAG002960.2	rs11576457	Serum concentration of 3-(4-hydroxyphenyl)lactate	21886157

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