Detail infomation of NONHSAG003219.1--NONCODE

Detail infomation of NONHSAG003219.1

General info

NONCODE GENE ID	NONHSAG003219.1
Chromosome	chr1
Start Site	160506863
End Site	160541248
Strand	+
Length	633
Assembly	hg19
Class	Antisense;
Other Gene Versions	NONHSAG003219.2

Transcripts in Gene

NONCODE TRANSCRIPT ID

NONHSAT007065.1

Expression Profile (Data Source:)

adipose	adrenal	brain	brain_R	breast	colon

foreskin	heart	heart_R	HLF_1	HLF_2	kidney

liver	liver_R	lung	lymphNode	ovary	placenta_R

prostate	skeltalMuscle	testes	testes_R	thyroid	whiteBloodCell

Exosome Expression Profile (Data Source: NCBI GEO)

Expression Profile (Data Source: Single Cell)

Conservation Info

Chordata
- Vertebrates
  - Manmals
    - Primates
      - Human
      - Chimp : N/A
      - Gorilla : N/A
      - Orangutan : N/A
      - Rhesus : N/A
    - Rodents
      - Mouse : N/A
      - Rat : N/A
    - Laurasiatheria
      - Pig : N/A
      - Cow : N/A
    - Opossum : N/A
    - Platypus : N/A
  - Birds
    - Chicken : N/A
- Actinopteryqii
  - Zebrafish : N/A

Note: T = There are transcripts in this region.

Disease related

Disease:

NONCODE ID	Gene Symbol	Disease name	Source Database	Source PMID
NONHSAG003219.2	RP11-528G1.2	stomach cancer	Lnc2Cancer	26045391
NONHSAG003219.2	RP11-528G1.2	gastric cancer	Lnc2Cancer	26045391

Mutations:

NONCODE ID	SNP ID	GWAS trait	Source PMID
NONHSAG003219.2	rs11265432	Blood pressure (response to angiotensin-converting enzyme inhibitor)	24192120
NONHSAG003219.2	rs11265432	Serum concentration of phenylalanine	21886157
NONHSAG003219.2	rs7418241	Differential splicing of SLAMF1 [probeset 2440329] in lymphoblastoid cell lines	19052777
NONHSAG003219.2	rs7418241	Methylation levels at chr1:158817112-158817162 [hg18 coord, probe cg02945019] in Cerebellum	20485568
NONHSAG003219.2	rs7418241	Differential exon level expression of SLAMF1 [probe 2440329] in peripheral blood mononuclear cells	19222302
NONHSAG003219.2	rs7418241	Serum ratio of (aspartate)/(aspartylphenylalanine)	21886157
NONHSAG003219.2	rs12144628	Differential splicing of SLAMF1 [probeset 2440329] in lymphoblastoid cell lines	19052777
NONHSAG003219.2	rs12144628	Methylation levels at chr1:158817112-158817162 [hg18 coord, probe cg02945019] in Cerebellum	20485568
NONHSAG003219.2	rs3816146	Differential splicing of SLAMF1 [probeset 2440329] in lymphoblastoid cell lines	19052777
NONHSAG003219.2	rs3816146	Methylation levels at chr1:158817112-158817162 [hg18 coord, probe cg02945019] in Cerebellum	20485568
NONHSAG003219.2	rs3816146	Differential exon level expression of SLAMF1 [probe 2440329] in peripheral blood mononuclear cells	19222302
NONHSAG003219.2	rs12134393	Monocyte count	21738479
NONHSAG003219.2	rs12134393	Serum ratio of (kynurenine)/(ornithine)	21886157
NONHSAG003219.2	rs12134393	Serum concentration of glutamate	21886157
NONHSAG003219.2	rs10737176	Monocyte count	21738479
NONHSAG003219.2	rs1503859	Serum concentration of 5-oxoproline	21886157
NONHSAG003219.2	rs1503860	Change in disease activity score (DAS) when treated with etanercept for rheumatoid arthritis patients	23555300
NONHSAG003219.2	rs17381453	Serum ratio of (arabinose)/(palmitoleate (16:1n7))	21886157
NONHSAG003219.2	rs3737792	Gene expression of CD84 in blood	21829388
NONHSAG003219.2	rs3737792	Serum ratio of (3-hydroxy-2-ethylpropionate)/(allantoin)	21886157
NONHSAG003219.2	rs3737792	Serum concentration of heme*	21886157
NONHSAG003219.2	rs11585738	Methylation levels at chr1:158817112-158817162 [hg18 coord, probe cg02945019] in Cerebellum	20485568
NONHSAG003219.2	rs6427528	Change in disease activity score (DAS) when treated with etanercept for rheumatoid arthritis patients	23555300
NONHSAG003219.2	rs6427528	Response to anti-TNF treatment in rheumatoid arthritis	23555300
NONHSAG003219.2	rs3733264	Methylation levels at chr1:158817112-158817162 [hg18 coord, probe cg02945019] in Cerebellum	20485568
NONHSAG003219.2	rs3733264	Differential splicing of SLAMF1 [probeset 2440329] in lymphoblastoid cell lines	19052777
NONHSAG003219.2	rs3733264	Gene expression of RAB2L in brain cortex	17982457
NONHSAG003219.2	rs3733264	Gene expression of CSNK1D in brain cortex	17982457
NONHSAG003219.2	rs3733264	Serum ratio of (1-oleoylglycerol (1-monoolein))/(arabinose)	21886157
NONHSAG003219.2	rs3733265	Methylation levels at chr1:158817112-158817162 [hg18 coord, probe cg02945019] in Cerebellum	20485568
NONHSAG003219.2	rs3733265	Differential splicing of SLAMF1 [probeset 2440329] in lymphoblastoid cell lines	19052777
NONHSAG003219.2	rs3733266	Methylation levels at chr1:158817112-158817162 [hg18 coord, probe cg02945019] in Cerebellum	20485568
NONHSAG003219.2	rs3733266	Differential splicing of SLAMF1 [probeset 2440329] in lymphoblastoid cell lines	19052777
NONHSAG003219.2	rs3733266	Trimethylamine concentration	21572414
NONHSAG003219.2	rs3766389	Methylation levels at chr1:158817112-158817162 [hg18 coord, probe cg02945019] in Cerebellum	20485568
NONHSAG003219.2	rs3766389	Gene expression of RAB2L in brain cortex	17982457
NONHSAG003219.2	rs3766389	Trimethylamine concentration	21572414
NONHSAG003219.2	rs3766389	Gene expression of CSNK1D in brain cortex	17982457
NONHSAG003219.2	rs3766388	Differential splicing of SLAMF1 [probeset 2440329] in lymphoblastoid cell lines	19052777
NONHSAG003219.2	rs3766388	Methylation levels at chr1:158817112-158817162 [hg18 coord, probe cg02945019] in Cerebellum	20485568
NONHSAG003219.2	rs1055880	Methylation levels at chr1:158817112-158817162 [hg18 coord, probe cg02945019] in Cerebellum	20485568
NONHSAG003219.2	rs1055880	Differential splicing of SLAMF1 [probeset 2440329] in lymphoblastoid cell lines	19052777
NONHSAG003219.2	rs1055880	Differential exon level expression of SLAMF1 [probe 2440329] in peripheral blood mononuclear cells	19222302
NONHSAG003219.2	rs1055880	Serum ratio of (aspartate)/(aspartylphenylalanine)	21886157
NONHSAG003219.2	rs3766387	Methylation levels at chr1:158817112-158817162 [hg18 coord, probe cg02945019] in Cerebellum	20485568
NONHSAG003219.2	rs3766387	Differential splicing of SLAMF1 [probeset 2440329] in lymphoblastoid cell lines	19052777
NONHSAG003219.2	rs3766385	Methylation levels at chr1:158817112-158817162 [hg18 coord, probe cg02945019] in Cerebellum	20485568
NONHSAG003219.2	rs3766385	Differential splicing of SLAMF1 [probeset 2440329] in lymphoblastoid cell lines	19052777
NONHSAG003219.2	rs2083128	Differential splicing of SLAMF1 [probeset 2440329] in lymphoblastoid cell lines	19052777
NONHSAG003219.2	rs2083128	Methylation levels at chr1:158817112-158817162 [hg18 coord, probe cg02945019] in Cerebellum	20485568
NONHSAG003219.2	rs7547054	Differential splicing of SLAMF1 [probeset 2440329] in lymphoblastoid cell lines	19052777
NONHSAG003219.2	rs7547054	Methylation levels at chr1:158817112-158817162 [hg18 coord, probe cg02945019] in Cerebellum	20485568
NONHSAG003219.2	rs11590809	Serum concentration of uridine	21886157
NONHSAG003219.2	rs11590035	Methylation levels at chr1:158817112-158817162 [hg18 coord, probe cg02945019] in Cerebellum	20485568
NONHSAG003219.2	rs11590035	Differential splicing of SLAMF1 [probeset 2440329] in lymphoblastoid cell lines	19052777
NONHSAG003219.2	rs6670721	Methylation levels at chr1:158817112-158817162 [hg18 coord, probe cg02945019] in Cerebellum	20485568
NONHSAG003219.2	rs6670721	Differential splicing of SLAMF1 [probeset 2440329] in lymphoblastoid cell lines	19052777
NONHSAG003219.2	rs6670721	Differential exon level expression of SLAMF1 [probe 2440329] in peripheral blood mononuclear cells	19222302
NONHSAG003219.2	rs6670721	Serum ratio of (1-myristoylglycerophosphocholine)/(4-methyl-2-oxopentanoate)	21886157
NONHSAG003219.2	rs6670721	Gene expression of SLAMF1 in blood	21829388
NONHSAG003219.2	rs6670721	Gene expression of NCSTN in blood	21829388
NONHSAG003219.2	rs7517554	Autism	20663923
NONHSAG003219.2	rs12728784	Methylation levels at chr1:158817112-158817162 [hg18 coord, probe cg02945019] in Cerebellum	20485568
NONHSAG003219.2	rs6687641	Differential splicing of SLAMF1 [probeset 2440329] in lymphoblastoid cell lines	19052777
NONHSAG003219.2	rs6687641	Methylation levels at chr1:158817112-158817162 [hg18 coord, probe cg02945019] in Cerebellum	20485568

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