An integrated knowledge database dedicated to ncRNAs, especially lncRNAs.
Detail infomation of NONHSAG003504.2

General info

NONCODE GENE IDNONHSAG003504.2
Chromosomechr1
Start Site173827684
End Site173838020
Strand-
Length9394
Assemblyhg19
ClassLinc;
Other Gene VersionsNONHSAG003504.3

Transcripts in Gene

NONCODE TRANSCRIPT ID
NONHSAT152557.1
NONHSAT152558.1
NONHSAT152559.1
NONHSAT152560.1
NONHSAT152561.1
NONHSAT152562.1
NONHSAT152563.1

Expression Profile (Data Source:)

adiposeadrenalbrainbrain_Rbreastcolon
foreskinheartheart_RHLF_1HLF_2kidney
liverliver_RlunglymphNodeovaryplacenta_R
prostateskeltalMuscletestestestes_RthyroidwhiteBloodCell
NA

Exosome Expression Profile (Data Source: NCBI GEO)

NA

Expression Profile (Data Source: Single Cell)

Conservation Info

  • Chordata
    • Vertebrates
      • Manmals
        • Primates
          • Human
          • Chimp : N/A
          • Gorilla : N/A
          • Orangutan : N/A
          • Rhesus : N/A
        • Rodents
          • Mouse : N/A
          • Rat : N/A
        • Laurasiatheria
          • Pig : N/A
          • Cow : N/A
        • Opossum : N/A
        • Platypus : N/A
      • Birds
        • Chicken : N/A
    • Actinopteryqii
      • Zebrafish : N/A

Note: T = There are transcripts in this region.

Disease related

Disease:

NONCODE IDGene SymbolDisease nameSource DatabaseSource PMID
NONHSAG003504.3GAS5autoimmune disease, B-cell neoplasms, breast cancer, kidney cancer, lymphoma, prostate cancer, melanoma, systemic lupus erythaematosusLncRNAWiki0
NONHSAG003504.3GAS5autoimmune diseaseLncRNADisease20124551
NONHSAG003504.3GAS5B-cell neoplasmsLncRNADisease24583225
NONHSAG003504.3GAS5bladder cancerLnc2Cancer24069260
NONHSAG003504.3GAS5breast cancerLnc2Cancer26662314
NONHSAG003504.3GAS5breast cancerLnc2Cancer27034004
NONHSAG003504.3GAS5breast cancerLnc2Cancer18836484
NONHSAG003504.3GAS5breast cancerLnc2Cancer24789445
NONHSAG003504.3GAS5breast cancerLncRNADisease18836484
NONHSAG003504.3GAS5breast cancerLncRNADisease20673990
NONHSAG003504.3GAS5breast cancerLncRNADisease24789445
NONHSAG003504.3GAS5cancerLncRNADisease24757675
NONHSAG003504.3GAS5cervical cancerLnc2Cancer22487937
NONHSAG003504.3GAS5cervical cancerLnc2Cancer25400758
NONHSAG003504.3GAS5colorectal cancerLnc2Cancer25326054
NONHSAG003504.3GAS5lymphomaLnc2Cancer24703244
NONHSAG003504.3GAS5prostate cancerLnc2Cancer23676682
NONHSAG003504.3GAS5prostate cancerMNDR18836484
NONHSAG003504.3GAS5prostate cancerLnc2Cancer23728290
NONHSAG003504.3GAS5stomach cancerLnc2Cancer24884417
NONHSAG003504.3GAS5stomach cancerLnc2Cancer26278580
NONHSAG003504.3GAS5urinary bladder cancerLnc2Cancer24069260
NONHSAG003504.3GAS5leukemiaLnc2Cancer20421347
NONHSAG003504.3GAS5breast cancerMNDR18836484
NONHSAG003504.3GAS5pancreatic cancerLnc2Cancer24026436
NONHSAG003504.3GAS5ovarian cancerLnc2Cancer26503132
NONHSAG003504.3GAS5endometrial carcinomaLnc2Cancer26511107
NONHSAG003504.3GAS5non-small cell lung carcinomaLnc2Cancer24357161
NONHSAG003504.3GAS5non-small cell lung carcinomaLnc2Cancer27338051
NONHSAG003504.3GAS5lung adenocarcinomaLnc2Cancer25925741
NONHSAG003504.3GAS5renal cell carcinomaLnc2Cancer23621190
NONHSAG003504.3GAS5hepatocellular carcinomaLnc2Cancer26109807
NONHSAG003504.3GAS5hepatocellular carcinomaLnc2Cancer26404135
NONHSAG003504.3GAS5hepatocellular carcinomaLnc2Cancer25120813
NONHSAG003504.3GAS5hepatocellular carcinomaMNDR26163879
NONHSAG003504.3GAS5T-cell leukemiaMNDR18354083
NONHSAG003504.3GAS5malignant pleural mesotheliomaLnc2Cancer24885398
NONHSAG003504.3GAS5multiple myelomaLnc2Cancer24583225
NONHSAG003504.3GAS5gastric cancerLnc2Cancer24884417
NONHSAG003504.3GAS5gastric cancerLnc2Cancer26278580
NONHSAG003504.3GAS5hepatocellular carcinomaLnc2Cancer26163879
NONHSAG003504.3GAS5kidney cancerLncRNADisease24373479
NONHSAG003504.3GAS5lymphomaLncRNADisease18836484
NONHSAG003504.3GAS5lymphomaLncRNADisease18406879
NONHSAG003504.3GAS5melanomaLncRNADisease18836484
NONHSAG003504.3GAS5non-small cell lung cancerLnc2Cancer24357161
NONHSAG003504.3GAS5non-small cell lung cancerLnc2Cancer27338051
NONHSAG003504.3GAS5prostate cancerLnc2Cancer18836484
NONHSAG003504.3GAS5prostatLncRNADisease18836484
NONHSAG003504.3GAS5prostatLncRNADisease24373479
NONHSAG003504.3GAS5tumorLncRNADisease24667321
NONHSAG003504.3GAS5tumorLncRNADisease22996375
NONHSAG003504.3GAS5tumorLncRNADisease24721780

Mutations:

NONCODE IDSNP IDGWAS traitSource PMID
NONHSAG003504.3rs16846433Gene expression of dJ383J4.3 in CEU lymphoblastoid cell lines17873874
NONHSAG003504.3rs16846433Bipolar disorder22182935
NONHSAG003504.3rs2281486Gene expression of DARS2 (probeID ILMN_1676191) in cerebellum in Alzheimer's disease cases and controls22685416
NONHSAG003504.3rs2281486Methylation levels at chr1:172153634-172153684 [hg18 coord, probe cg14047008] in Caudal pons20485568
NONHSAG003504.3rs2281486Serum ratio of (1,3,7-trimethylurate)/(bradykinin, des-arg(9))21886157
NONHSAG003504.3rs2281486Gene expression of DARS2 (probeID ILMN_1676191) in temporal cortex in Alzheimer's disease cases and controls22685416
NONHSAG003504.3rs16846439Methylation levels at chr1:172153634-172153684 [hg18 coord, probe cg14047008] in Caudal pons20485568
NONHSAG003504.3rs16846439Gene expression of SERPINC1 (probeID ILMN_1762605) in temporal cortex in Alzheimer's disease cases and controls22685416
NONHSAG003504.3rs16846439Gene expression of SERPINC1 (probeID ILMN_1762605) in cerebellum in Alzheimer's disease cases and controls22685416
NONHSAG003504.3rs2295366Methylation levels at chr1:172153634-172153684 [hg18 coord, probe cg14047008] in Caudal pons20485568
NONHSAG003504.3rs22953662 hour insulin17463246
NONHSAG003504.3rs2295366Serum ratio of (N-acetylglycine)/(phenylacetate)21886157
NONHSAG003504.3rs2208850Autism without verbal ability20663923
NONHSAG003504.3rs2208850Autism20663923
NONHSAG003504.3rs9660185Serum concentration of 3-methyl-2-oxobutyrate21886157
NONHSAG003504.3rs9442660Urinary albumin-to-creatinine ratio21355061
NONHSAG003504.3rs2067079Methylation levels at chr1:172153634-172153684 [hg18 coord, probe cg14047008] in Caudal pons20485568
NONHSAG003504.3rs2067079Gene expression of SERPINC1 (probeID ILMN_1762605) in temporal cortex in Alzheimer's disease cases and controls22685416
NONHSAG003504.3rs2067079Gene expression of SERPINC1 (probeID ILMN_1762605) in cerebellum in Alzheimer's disease cases and controls22685416
NONHSAG003504.3rs1951625Methylation levels at chr1:172153634-172153684 [hg18 coord, probe cg14047008] in Caudal pons20485568
NONHSAG003504.3rs1951625Gene expression of SERPINC1 (probeID ILMN_1762605) in temporal cortex in Alzheimer's disease cases and controls22685416
NONHSAG003504.3rs1951625Gene expression of SERPINC1 (probeID ILMN_1762605) in cerebellum in Alzheimer's disease cases and controls22685416

  NONCODE

Introduce of NONCODE
Browse NONCODE
Search a gene/transcript
Statistics
Blast
Genome
ID Conversion
Download

  Bio-tools

ncFANs
CNCI
lnc-GFP
lncRNA Analysis pipeline