Detail infomation of NONHSAG003976.3--NONCODE

An integrated knowledge database dedicated to ncRNAs, especially lncRNAs.

Detail infomation of NONHSAG003976.3

General info

NONCODE GENE ID	NONHSAG003976.3
Chromosome	chr1
Start Site	202810881
End Site	202814455
Strand	+
Length	3391
Assembly	hg38
Class	Linc;
Other Gene Versions	NONHSAG003976.1(old version)

Transcripts in Gene

NONCODE TRANSCRIPT ID

NONHSAT150330.1

NONHSAT225837.1

NONHSAT225838.1

NONHSAT225839.1

NONHSAT008851.2

NONHSAT008852.2

Expression Profile (Data Source:Human Body Map)

adipose	adrenal	brain	brain_R	breast	colon
0.0129818	0.00323547	0.0134042	0.0631349	0.0106721	0.00040579
foreskin	heart	heart_R	HLF_1	HLF_2	kidney
0	0.0144457	0	0	0.00944187	0.000290272
liver	liver_R	lung	lymphNode	ovary	placenta_R
0.000522132	0	0.00218111	0	0.00325103	0.00152355
prostate	skeltalMuscle	testes	testes_R	thyroid	whiteBloodCell
0	0.000348478	0.0120618	0.0599285	0.0134578	0

Expression profile of NONHSAG003976 in Human tissues

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Exosome Expression Profile (Data Source: NCBI GEO)

A431_cellLine (Squamous Cell Carcinoma Cell Line Exosomes)	BJ_cellLine (Foreskin Fibroblast Cell Line Exosomes)	HepG2_cellLine (Hepatocellular Carcinoma Cell Line Exosomes)	HUVEC_cellLine (Human Umbilical Vein Endothelial Cell Line Exosomes)	invasive_NFPAs (Invasive Non-functional Pituitary Adenomas Exosomes)
0	1.34581	2.21806	0.569466	6.66885
non-invasive_NFPAs (Non-invasive Non-functional Pituitary Adenomas Exosomes)	MCF7_cellLine (Human Breast Cancer Cell Line Exosomes)	MDA-MB-231_cellLine (Human Breast Cancer Cell Line Exosomes)	tuberculosis_patients_serum (Active Tuberculosis Patients Serum Exosomes)	normal_people_blood (Normal People Blood Exosomes)
8.72493	0	0	9.31015	0

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Expression Profile (Data Source: Single Cell)

Conservation Info

Chordata
- Vertebrates
  - Manmals
    - Primates
      - Human
      - Chimp : N/A
      - Gorilla : N/A
      - Orangutan : N/A
      - Rhesus : N/A
    - Rodents
      - Mouse : N/A
      - Rat : N/A
    - Laurasiatheria
      - Pig : N/A
      - Cow : N/A
    - Opossum : N/A
    - Platypus : N/A
  - Birds
    - Chicken : N/A
- Actinopteryqii
  - Zebrafish : N/A

Note: T = There are transcripts in this region.

Disease related

Disease:

NONCODE ID	Gene Symbol	Disease name	Source Database	Source PMID
NONHSAG003976.3	PCAT6	triple-receptor negative breast cancer	Lnc2Cancer	25996380
NONHSAG003976.3	PCAT6	prostate cancer	Lnc2Cancer	23728290
NONHSAG003976.3	PCAT6	non-small cell lung carcinoma	Lnc2Cancer	27322209
NONHSAG003976.3	PCAT6	prostate cancer	LncRNAWiki	0

Mutations:

NONCODE ID	SNP ID	GWAS trait	Source PMID
NONHSAG003976.3	rs2275895	Serum ratio of (alpha-hydroxyisovalerate)/(ursodeoxycholate)	21886157
NONHSAG003976.3	rs2246083	Amyotrophic lateral sclerosis (ALS) age of onset	22959728
NONHSAG003976.3	rs2246083	Serum ratio of (1-methylurate)/(1-methylxanthine)	21886157

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