Detail infomation of NONHSAG004197.3--NONCODE

An integrated knowledge database dedicated to ncRNAs, especially lncRNAs.

Detail infomation of NONHSAG004197.3

General info

NONCODE GENE ID	NONHSAG004197.3
Chromosome	chr1
Start Site	211382802
End Site	211435497
Strand	+
Length	5414
Assembly	hg38
Class	Linc;
Other Gene Versions	NONHSAG004197.2(old version)

Transcripts in Gene

NONCODE TRANSCRIPT ID

NONHSAT150454.1

NONHSAT150455.1

NONHSAT225913.1

NONHSAT225914.1

NONHSAT225915.1

NONHSAT225916.1

NONHSAT009289.2

NONHSAT009290.2

NONHSAT009292.2

NONHSAT009293.2

NONHSAT009298.2

NONHSAT259083.1

Expression Profile (Data Source:Human Body Map)

adipose	adrenal	brain	brain_R	breast	colon
0.183221	0.162138	0.129558	0.434434	0.109564	0.111743
foreskin	heart	heart_R	HLF_1	HLF_2	kidney
0.164591	0.204177	0.207941	0.334555	0.168434	0.220606
liver	liver_R	lung	lymphNode	ovary	placenta_R
0.0592141	0.0393536	0.238153	0.168254	0.154998	0.387518
prostate	skeltalMuscle	testes	testes_R	thyroid	whiteBloodCell
0.300492	0.620746	0.676396	1.87879	0.63657	0.258

Expression profile of NONHSAG004197 in Human tissues

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Exosome Expression Profile (Data Source: NCBI GEO)

A431_cellLine (Squamous Cell Carcinoma Cell Line Exosomes)	BJ_cellLine (Foreskin Fibroblast Cell Line Exosomes)	HepG2_cellLine (Hepatocellular Carcinoma Cell Line Exosomes)	HUVEC_cellLine (Human Umbilical Vein Endothelial Cell Line Exosomes)	invasive_NFPAs (Invasive Non-functional Pituitary Adenomas Exosomes)
0	6.44327	4.12038	2.98278	3.28228
non-invasive_NFPAs (Non-invasive Non-functional Pituitary Adenomas Exosomes)	MCF7_cellLine (Human Breast Cancer Cell Line Exosomes)	MDA-MB-231_cellLine (Human Breast Cancer Cell Line Exosomes)	tuberculosis_patients_serum (Active Tuberculosis Patients Serum Exosomes)	normal_people_blood (Normal People Blood Exosomes)
3.60956	0	0	5.58265	2.38372

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Expression Profile (Data Source: Single Cell)

Conservation Info

Chordata
- Vertebrates
  - Manmals
    - Primates
      - Human
      - Chimp : chr1( len:71059 )^T
      - Gorilla : N/A
      - Orangutan : N/A
      - Rhesus : N/A
    - Rodents
      - Mouse : N/A
      - Rat : N/A
    - Laurasiatheria
      - Pig : N/A
      - Cow : N/A
    - Opossum : N/A
    - Platypus : N/A
  - Birds
    - Chicken : N/A
- Actinopteryqii
  - Zebrafish : N/A

Note: T = There are transcripts in this region.

Disease related

Disease:

NONCODE ID	Gene Symbol	Disease name	Source Database	Source PMID
NONHSAG004197.3	LINC00467	neuroblastoma	MNDR	24586304
NONHSAG004197.3	LINC00467	neuroblastoma	Lnc2Cancer	24586304

Mutations:

NONCODE ID	SNP ID	GWAS trait	Source PMID
NONHSAG004197.3	rs17017451	Autism	20663923
NONHSAG004197.3	rs17017451	Gene expression of LINC00467 in normal prepouch ileum	23474282
NONHSAG004197.3	rs12565472	Chronic kidney disease	20383146
NONHSAG004197.3	rs784379	Transmission distortion	22377632
NONHSAG004197.3	rs784380	Serum ratio of (benzoate)/(riboflavin (Vitamin B2))	21886157
NONHSAG004197.3	rs784382	College completion	23722424
NONHSAG004197.3	rs784385	College completion	23722424
NONHSAG004197.3	rs1707252	Adiponectin levels	22479202
NONHSAG004197.3	rs784366	Serum ratio of (arabinose)/(gamma-glutamylvaline)	21886157
NONHSAG004197.3	rs12733930	College completion	23722424
NONHSAG004197.3	rs1055565	Serum ratio of (ascorbate (Vitamin C))/(glycochenodeoxycholate)	21886157

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