Detail infomation of NONHSAG006894.3--NONCODE

An integrated knowledge database dedicated to ncRNAs, especially lncRNAs.

Detail infomation of NONHSAG006894.3

General info

NONCODE GENE ID	NONHSAG006894.3
Chromosome	chr10
Start Site	112888732
End Site	112945195
Strand	+
Length	1953
Assembly	hg38
Class	Linc;
Other Gene Versions	NONHSAG006894.2(old version)

Transcripts in Gene

NONCODE TRANSCRIPT ID

NONHSAT228527.1

NONHSAT016416.2

NONHSAT016417.2

NONHSAT016418.2

Expression Profile (Data Source:Human Body Map)

adipose	adrenal	brain	brain_R	breast	colon
0	0	0	0	0	0
foreskin	heart	heart_R	HLF_1	HLF_2	kidney
0	0	0	0	0	0
liver	liver_R	lung	lymphNode	ovary	placenta_R
0	0	0	0	0	0
prostate	skeltalMuscle	testes	testes_R	thyroid	whiteBloodCell
0	0	0.0325049	0.0216162	0	0

Expression profile of NONHSAG006894 in Human tissues

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Exosome Expression Profile (Data Source: NCBI GEO)

A431_cellLine (Squamous Cell Carcinoma Cell Line Exosomes)	BJ_cellLine (Foreskin Fibroblast Cell Line Exosomes)	HepG2_cellLine (Hepatocellular Carcinoma Cell Line Exosomes)	HUVEC_cellLine (Human Umbilical Vein Endothelial Cell Line Exosomes)	invasive_NFPAs (Invasive Non-functional Pituitary Adenomas Exosomes)
0	0.373933	2.9516	0	7.44353
non-invasive_NFPAs (Non-invasive Non-functional Pituitary Adenomas Exosomes)	MCF7_cellLine (Human Breast Cancer Cell Line Exosomes)	MDA-MB-231_cellLine (Human Breast Cancer Cell Line Exosomes)	tuberculosis_patients_serum (Active Tuberculosis Patients Serum Exosomes)	normal_people_blood (Normal People Blood Exosomes)
7.76277	0	0	5.2331	1.4021

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Expression Profile (Data Source: Single Cell)

Conservation Info

Chordata
- Vertebrates
  - Manmals
    - Primates
      - Human
      - Chimp : chr10( len:56776 )
      - Gorilla : chr10( len:69598 )^T
      - Orangutan : N/A
      - Rhesus : N/A
    - Rodents
      - Mouse : N/A
      - Rat : N/A
    - Laurasiatheria
      - Pig : N/A
      - Cow : N/A
    - Opossum : N/A
    - Platypus : N/A
  - Birds
    - Chicken : N/A
- Actinopteryqii
  - Zebrafish : N/A

Note: T = There are transcripts in this region.

Disease related

Disease:

NONCODE ID	Gene Symbol	Disease name	Source Database	Source PMID
NONHSAG006894.3	TCF7	gastric cardia adenocarcinoma	Lnc2Cancer	24414129
NONHSAG006894.3	TCF7	hepatocellular carcinoma	Lnc2Cancer	25842979
NONHSAG006894.3	TCF7	hepatocellular carcinoma	Lnc2Cancer	26452542

Mutations:

NONCODE ID	SNP ID	GWAS trait	Source PMID
NONHSAG006894.3	rs17746501	Type 2 diabetes, combined control dataset	17554300
NONHSAG006894.3	rs17746501	Multiple complex diseases	17554300
NONHSAG006894.3	rs17130133	Gene expression of MLLT3 in peripheral blood monocytes	20502693
NONHSAG006894.3	rs17130133	Type 2 diabetes, combined control dataset	17554300
NONHSAG006894.3	rs17130133	Multiple complex diseases	17554300
NONHSAG006894.3	rs1556014	Multiple complex diseases	17554300
NONHSAG006894.3	rs1556014	Type 2 diabetes, combined control dataset	17554300
NONHSAG006894.3	rs11196146	Total cholesterol	20686565
NONHSAG006894.3	rs7076475	Obsessive-compulsive disorder (OCD)	22889921
NONHSAG006894.3	rs17130147	Obsessive-compulsive disorder (OCD)	22889921
NONHSAG006894.3	rs7075934	Major depressive disorder (broad definition) (females)	20038947
NONHSAG006894.3	rs10509967	HIV-1 disease progression	20041166
NONHSAG006894.3	rs10047299	HIV-1 disease progression	20041166

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