An integrated knowledge database dedicated to ncRNAs, especially lncRNAs.
Detail infomation of NONHSAG006966.3

General info

NONCODE GENE IDNONHSAG006966.3
Chromosomechr10
Start Site118045861
End Site118216096
Strand+
Length15101
Assemblyhg38
ClassLinc;
Other Gene VersionsNONHSAG006966.2(old version)

Transcripts in Gene

NONCODE TRANSCRIPT ID
NONHSAT156188.1
NONHSAT156189.1
NONHSAT156190.1
NONHSAT228547.1
NONHSAT228548.1
NONHSAT228549.1
NONHSAT228550.1
NONHSAT016549.2
NONHSAT016550.2
NONHSAT016551.2
NONHSAT016552.2
NONHSAT016554.2

Expression Profile (Data Source:Human Body Map)

adiposeadrenalbrainbrain_Rbreastcolon
0.008211210.000300390.001229390.0027008200.00460024
foreskinheartheart_RHLF_1HLF_2kidney
000.0018263600.001121880
liverliver_RlunglymphNodeovaryplacenta_R
0.00067312806.70389e-050.0008182080.0002078820.000651266
prostateskeltalMuscletestestestes_RthyroidwhiteBloodCell
0.00067723300.1069350.0284880.00236240.00011299
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Exosome Expression Profile (Data Source: NCBI GEO)

A431_cellLine
(Squamous Cell Carcinoma Cell Line Exosomes)		BJ_cellLine
(Foreskin Fibroblast Cell Line Exosomes)		HepG2_cellLine
(Hepatocellular Carcinoma Cell Line Exosomes)		HUVEC_cellLine
(Human Umbilical Vein Endothelial Cell Line Exosomes)		invasive_NFPAs
(Invasive Non-functional Pituitary Adenomas Exosomes)
3.523232.449581.858960.1777624.36104
non-invasive_NFPAs
(Non-invasive Non-functional Pituitary Adenomas Exosomes)		MCF7_cellLine
(Human Breast Cancer Cell Line Exosomes)		MDA-MB-231_cellLine
(Human Breast Cancer Cell Line Exosomes)		tuberculosis_patients_serum
(Active Tuberculosis Patients Serum Exosomes)		normal_people_blood
(Normal People Blood Exosomes)
4.23893004.182770.107343
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Expression Profile (Data Source: Single Cell)

Conservation Info

  • Chordata
    • Vertebrates
      • Manmals
        • Primates
        • Rodents
          • Mouse : N/A
          • Rat : N/A
        • Laurasiatheria
          • Pig : N/A
          • Cow : N/A
        • Opossum : N/A
        • Platypus : N/A
      • Birds
        • Chicken : N/A
    • Actinopteryqii
      • Zebrafish : N/A

Note: T = There are transcripts in this region.

Disease related

Disease:

NONCODE IDGene SymbolDisease nameSource DatabaseSource PMID
NONHSAG006966.3CASC2colorectal cancerLnc2Cancer27198161
NONHSAG006966.3CASC2colorectal cancerLncRNAWiki0
NONHSAG006966.3CASC2malignant gliomaMNDR25446261
NONHSAG006966.3CASC2endometrial cancerLncRNADisease15024726
NONHSAG006966.3CASC2gliomaLnc2Cancer25446261

Mutations:

NONCODE IDSNP IDGWAS traitSource PMID
NONHSAG006966.3rs853577Phenytoin-induced hypersensitivity22379998
NONHSAG006966.3rs7906694Lung function (forced expiratory volume in 1 second)0
NONHSAG006966.3rs7906694TrailsB20125193
NONHSAG006966.3rs1932644Amyotrophic lateral sclerosis (sporadic)24529757
NONHSAG006966.3rs11198259Gene expression of RAB11FIP2 in blood21829388
NONHSAG006966.3rs17097314Gene expression of TMC6 in peripheral blood monocytes20502693
NONHSAG006966.3rs2907598Rheumatoid arthritis, combined control dataset, gender differentiated17554300
NONHSAG006966.3rs2907598Multiple complex diseases17554300
NONHSAG006966.3rs853600Leprosy20018961
NONHSAG006966.3rs853600Lung function (forced expiratory volume in 1 second)0
NONHSAG006966.3rs11198295Gene expression of TNRC6A in peripheral blood monocytes20502693
NONHSAG006966.3rs11198303Gene expression of TNRC6A in peripheral blood monocytes20502693
NONHSAG006966.3rs703424Differential exon level expression of C10orf84 [probe 3308981] in brain cortex19222302
NONHSAG006966.3rs853571Gene expression of TNRC6A in peripheral blood monocytes20502693

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