Detail infomation of NONHSAG007898.1--NONCODE

Detail infomation of NONHSAG007898.1

General info

NONCODE GENE ID	NONHSAG007898.1
Chromosome	chr11
Start Site	27506837
End Site	27698248
Strand	+
Length	5714
Assembly	hg38
Class	Linc;
Other Gene Versions	NONHSAG007898.3

Transcripts in Gene

NONCODE TRANSCRIPT ID

Expression Profile (Data Source:Human Body Map)

adipose	adrenal	brain	brain_R	breast	colon

foreskin	heart	heart_R	HLF_1	HLF_2	kidney

liver	liver_R	lung	lymphNode	ovary	placenta_R

prostate	skeltalMuscle	testes	testes_R	thyroid	whiteBloodCell

Exosome Expression Profile (Data Source: NCBI GEO)

Expression Profile (Data Source: Single Cell)

Conservation Info

Chordata
- Vertebrates
  - Manmals
    - Primates
      - Human
      - Chimp : N/A
      - Gorilla : N/A
      - Orangutan : N/A
      - Rhesus : N/A
    - Rodents
      - Mouse : N/A
      - Rat : N/A
    - Laurasiatheria
      - Pig : N/A
      - Cow : N/A
    - Opossum : N/A
    - Platypus : N/A
  - Birds
    - Chicken : N/A
- Actinopteryqii
  - Zebrafish : N/A

Note: T = There are transcripts in this region.

Disease related

Disease:

NONCODE ID	Gene Symbol	Disease name	Source Database	Source PMID
NONHSAG007898.3	BDNF-AS	Seizures		22960213
NONHSAG007898.3	BDNF-AS	depression	LncRNADisease	23562612
NONHSAG007898.3	BDNF-AS	Huntington's disease	LncRNADisease	23562612
NONHSAG007898.3	BDNF-AS	Huntington's disease	LncRNADisease	24624135
NONHSAG007898.3	BDNF-AS	Huntington's disease, psychiatric disease, schizophrenia, obesity	LncRNAWiki	0
NONHSAG007898.3	BDNF-AS	psychiatric disease	LncRNADisease	23831425
NONHSAG007898.3	BDNF-AS	schizophrenia	LncRNADisease	23562612

Mutations:

NONCODE ID	SNP ID	GWAS trait	Source PMID
NONHSAG007898.3	rs3763965	LIN7C gene expression in Adipose tissue	22504420
NONHSAG007898.3	rs3763965	LIN7C gene expression in Whole blood	22504420
NONHSAG007898.3	rs3763965	Bone mineral density (paediatric, skull)	24945404
NONHSAG007898.3	rs6484311	Survival in pancreatic cancer	23180869
NONHSAG007898.3	rs6484311	Body mass index (BMI)	20935630
NONHSAG007898.3	rs6484311	Obesity with early age of onset (age >2)	22484627
NONHSAG007898.3	rs11823126	Body mass index (BMI)	20935630
NONHSAG007898.3	rs7127273	Body mass index (BMI)	21935397
NONHSAG007898.3	rs6484312	Body mass index (BMI)	20935630
NONHSAG007898.3	rs6484313	Body mass index (BMI)	20935630
NONHSAG007898.3	rs10835189	Bone mineral density (paediatric, skull)	24945404
NONHSAG007898.3	rs10835189	Gene expression of LIN7C in liver	21637794
NONHSAG007898.3	rs901925	Body mass index (BMI)	20935630
NONHSAG007898.3	rs2101467	Body mass index (BMI)	20935630
NONHSAG007898.3	rs10835190	Body mass index (BMI)	20935630
NONHSAG007898.3	rs10835190	Survival in pancreatic cancer	23180869
NONHSAG007898.3	rs7127239	Body mass index (BMI)	20935630
NONHSAG007898.3	rs7127239	Obesity with early age of onset (age >2)	22484627
NONHSAG007898.3	rs1038659	Survival in pancreatic cancer	23180869
NONHSAG007898.3	rs1038659	Body mass index (BMI)	20935630
NONHSAG007898.3	rs1038660	Body mass index (BMI)	20935630
NONHSAG007898.3	rs1038660	Obesity with early age of onset (age >2)	22484627
NONHSAG007898.3	rs6484314	Body mass index (BMI)	20935630
NONHSAG007898.3	rs7107410	Body mass index (BMI)	20935630
NONHSAG007898.3	rs7107410	Obesity with early age of onset (age >2)	22484627
NONHSAG007898.3	rs1488829	Body mass index (BMI)	20935630
NONHSAG007898.3	rs10767646	Body mass index (BMI)	20935630
NONHSAG007898.3	rs10767646	Survival in pancreatic cancer	23180869
NONHSAG007898.3	rs10767646	Bone mineral density	24249740
NONHSAG007898.3	rs988712	Obesity	21708048
NONHSAG007898.3	rs988712	Obesity (body mass index (BMI))	21708048
NONHSAG007898.3	rs988712	Obesity (body mass index (BMI)) (females)	21708048
NONHSAG007898.3	rs988712	Body mass index (BMI)	20935630
NONHSAG007898.3	rs988712	Obesity (body mass index (BMI)) (males)	21708048
NONHSAG007898.3	rs10767647	Body mass index (BMI)	20935630
NONHSAG007898.3	rs10767647	Obesity with early age of onset (age >2)	22484627
NONHSAG007898.3	rs1304101	Bone mineral density (paediatric, skull)	24945404
NONHSAG007898.3	rs1304100	Body mass index (BMI)	20935630
NONHSAG007898.3	rs1304100	Nicotine dependence (smoking), ever smokers vs never smokers	22832964
NONHSAG007898.3	rs1304100	Nicotine dependence (smoking), ever smokers versus never smokers	20418890
NONHSAG007898.3	rs10835193	Bone mineral density (paediatric, skull)	24945404
NONHSAG007898.3	rs1906654	Body mass index (BMI)	20935630
NONHSAG007898.3	rs10835195	Body mass index (BMI)	20935630
NONHSAG007898.3	rs1013442	Body mass index (BMI)	20935630
NONHSAG007898.3	rs1013442	Nicotine dependence (smoking), ever smokers versus never smokers	20418890
NONHSAG007898.3	rs7481311	Body mass index (BMI)	19079260
NONHSAG007898.3	rs7481311	Weight	19079260
NONHSAG007898.3	rs7481311	Weight	19079260
NONHSAG007898.3	rs7481311	Body mass index (BMI)	20935630
NONHSAG007898.3	rs7481311	Smoking behavior	20418888
NONHSAG007898.3	rs7481311	Body mass index	19079260
NONHSAG007898.3	rs7481311	Obesity with early age of onset (age >2)	22484627
NONHSAG007898.3	rs10501086	Gene expression of GRK1 in peripheral blood monocytes	20502693
NONHSAG007898.3	rs10501086	Smoking initiation	24665060
NONHSAG007898.3	rs4923455	Body mass index (BMI)	20935630
NONHSAG007898.3	rs7124596	Body mass index (BMI)	20935630
NONHSAG007898.3	rs12577586	Body mass index (BMI)	20935630
NONHSAG007898.3	rs12577586	Survival in pancreatic cancer	23180869
NONHSAG007898.3	rs10835196	Bone mineral density (paediatric, skull)	24945404
NONHSAG007898.3	rs10835197	Body mass index (BMI)	20935630
NONHSAG007898.3	rs4923456	Body mass index (BMI)	20935630
NONHSAG007898.3	rs10742178	Body mass index (BMI)	20935630
NONHSAG007898.3	rs10767649	Body mass index (BMI)	20935630
NONHSAG007898.3	rs11030064	Bone mineral density (paediatric, skull)	24945404
NONHSAG007898.3	rs11030064	Personality dimensions	18957941
NONHSAG007898.3	rs11030064	Extraversion	18957941
NONHSAG007898.3	rs10835201	Body mass index (BMI)	20935630
NONHSAG007898.3	rs10835201	Survival in pancreatic cancer	23180869
NONHSAG007898.3	rs11030066	Body mass index (BMI)	20935630
NONHSAG007898.3	rs11030066	Infant head circumference	22504419
NONHSAG007898.3	rs12361806	Body mass index (BMI)	20935630
NONHSAG007898.3	rs12361806	Obesity with early age of onset (age >2)	22484627
NONHSAG007898.3	rs7937150	Bone mineral density (paediatric, skull)	24945404
NONHSAG007898.3	rs7937485	Bone mineral density (paediatric, skull)	24945404
NONHSAG007898.3	rs11030067	Body mass index (BMI)	20935630
NONHSAG007898.3	rs11030067	Obesity with early age of onset (age >2)	22484627
NONHSAG007898.3	rs12798439	Bone mineral density (paediatric, skull)	24945404
NONHSAG007898.3	rs7949590	Bone mineral density (paediatric, skull)	24945404
NONHSAG007898.3	rs7949590	Gene expression of HOOK1 in peripheral blood monocytes	20502693
NONHSAG007898.3	rs11030073	Bone mineral density (paediatric, skull)	24945404
NONHSAG007898.3	rs11030075	Body mass index (BMI)	20935630
NONHSAG007898.3	rs12223664	Bone mineral density (paediatric, skull)	24945404
NONHSAG007898.3	rs12807253	Body mass index (BMI)	20935630
NONHSAG007898.3	rs10734394	Body mass index (BMI)	20935630
NONHSAG007898.3	rs10767651	Bone mineral density (paediatric, skull)	24945404
NONHSAG007898.3	rs10767652	Bone mineral density (paediatric, skull)	24945404
NONHSAG007898.3	rs7939810	High myopia	21095009
NONHSAG007898.3	rs1488830	Body mass index (BMI)	20935630
NONHSAG007898.3	rs1488830	Obesity with early age of onset (age >2)	22484627
NONHSAG007898.3	rs1488831	Diastolic blood pressure (DBP)	21909115
NONHSAG007898.3	rs879048	Body mass index (BMI)	20935630
NONHSAG007898.3	rs879048	Nicotine dependence (smoking), ever smokers vs never smokers	22832964
NONHSAG007898.3	rs879048	Nicotine dependence (smoking), ever smokers versus never smokers	20418890
NONHSAG007898.3	rs879048	Obesity with early age of onset (age >2)	22484627
NONHSAG007898.3	rs879048	Coronary artery disease (CAD)	23202125
NONHSAG007898.3	rs11030084	Body mass index (BMI)	20935630
NONHSAG007898.3	rs11030084	Obesity with early age of onset (age >2)	22484627
NONHSAG007898.3	rs11030084	Diastolic blood pressure (DBP)	21909115
NONHSAG007898.3	rs7116850	Body mass index (BMI)	20935630
NONHSAG007898.3	rs7116850	Obesity with early age of onset (age >2)	22484627
NONHSAG007898.3	rs7116850	Gene expression of BDNF in CD4+ lymphocytes	20833654
NONHSAG007898.3	rs11030086	Body mass index (BMI)	20935630
NONHSAG007898.3	rs11030086	Obesity with early age of onset (age >2)	22484627
NONHSAG007898.3	rs6416056	Body mass index (BMI)	20935630
NONHSAG007898.3	rs6416056	Obesity with early age of onset (age >2)	22484627
NONHSAG007898.3	rs4074134	Body mass index (BMI)	20935630
NONHSAG007898.3	rs4074134	Body mass index (BMI)	19079260
NONHSAG007898.3	rs4074134	Nicotine dependence (smoking), ever smokers vs never smokers	22832964
NONHSAG007898.3	rs4074134	Nicotine dependence (smoking), ever smokers versus never smokers	20418890
NONHSAG007898.3	rs4074134	Weight	19079260
NONHSAG007898.3	rs4074134	Smoking behavior	20418888
NONHSAG007898.3	rs4074134	Obesity with early age of onset (age >2)	22484627
NONHSAG007898.3	rs4074134	Waist circumference	19557161
NONHSAG007898.3	rs4923457	Body mass index (BMI)	20935630
NONHSAG007898.3	rs4923457	Nicotine dependence (smoking), ever smokers vs never smokers	22832964
NONHSAG007898.3	rs4923457	Nicotine dependence (smoking), ever smokers versus never smokers	20418890
NONHSAG007898.3	rs4923457	Obesity with early age of onset (age >2)	22484627
NONHSAG007898.3	rs10742179	Body mass index (BMI)	20935630
NONHSAG007898.3	rs10742179	Obesity with early age of onset (age >2)	22484627
NONHSAG007898.3	rs4923460	Body mass index (BMI)	20935630
NONHSAG007898.3	rs4923460	Nicotine dependence (smoking), ever smokers versus never smokers	20418890
NONHSAG007898.3	rs4923460	Nicotine dependence (smoking), ever smokers vs never smokers	22832964
NONHSAG007898.3	rs4923460	Obesity with early age of onset (age >2)	22484627
NONHSAG007898.3	rs4923460	Coronary artery disease (CAD)	23202125
NONHSAG007898.3	rs4923461	Body mass index (BMI)	20935630
NONHSAG007898.3	rs4923461	Body mass index (BMI)	19079260
NONHSAG007898.3	rs4923461	Weight	19079260
NONHSAG007898.3	rs4923461	Smoking behavior	20418888
NONHSAG007898.3	rs4923461	Body mass index (BMI) (study year x genotype interaction)	20966902
NONHSAG007898.3	rs4923461	Body mass index (BMI) (genotype x age interactions)	20966902
NONHSAG007898.3	rs4923461	Obesity with early age of onset (age >2)	22484627
NONHSAG007898.3	rs4923461	Age at menarche	19448622
NONHSAG007898.3	rs4923461	Body mass index (BMI)	20966902
NONHSAG007898.3	rs4923461	Age at menarche	21102462
NONHSAG007898.3	rs11030094	Bone mineral density (paediatric, skull)	24945404
NONHSAG007898.3	rs7130131	Diastolic blood pressure (DBP)	21909115
NONHSAG007898.3	rs11030096	Bone mineral density (paediatric, skull)	24945404
NONHSAG007898.3	rs7126752	Height (Pygmy height)	22570615
NONHSAG007898.3	rs7126752	Acute lung injury following major trauma	22295056
NONHSAG007898.3	rs7130233	Height (Pygmy height)	22570615
NONHSAG007898.3	rs7130233	Acute lung injury following major trauma	22295056
NONHSAG007898.3	rs12419948	Body mass index (BMI)	20935630
NONHSAG007898.3	rs12419948	Obesity with early age of onset (age >2)	22484627
NONHSAG007898.3	rs925946	LIN7C expression for Adipose tissue	19079260
NONHSAG007898.3	rs925946	Body mass index (BMI)	19079260
NONHSAG007898.3	rs925946	Body mass index	19079260
NONHSAG007898.3	rs925946	Weight	19079260
NONHSAG007898.3	rs925946	Weight	19079260
NONHSAG007898.3	rs925946	Body mass index (BMI)	20935630
NONHSAG007898.3	rs925946	LIN7C expression for Blood tissue	19079260
NONHSAG007898.3	rs925946	Smoking behavior	20418888
NONHSAG007898.3	rs925946	Obesity (body mass index (BMI))	19079260
NONHSAG007898.3	rs925946	Obesity with early age of onset (age >2)	22484627
NONHSAG007898.3	rs925946	Premature ovarian failure	19508998
NONHSAG007898.3	rs17309874	Body mass index (BMI)	20935630
NONHSAG007898.3	rs17309874	Obesity with early age of onset (age >2)	22484627
NONHSAG007898.3	rs925947	Body mass index (BMI)	20935630
NONHSAG007898.3	rs925947	Obesity with early age of onset (age >2)	22484627
NONHSAG007898.3	rs7927728	Diastolic blood pressure (DBP)	21909115
NONHSAG007898.3	rs1519479	Bone mineral density (paediatric, skull)	24945404
NONHSAG007898.3	rs10501087	Body mass index (BMI)	20935630
NONHSAG007898.3	rs10501087	Body mass index (BMI)	19079260
NONHSAG007898.3	rs10501087	Weight	19079260
NONHSAG007898.3	rs10501087	Smoking behavior	20418888
NONHSAG007898.3	rs10501087	Esophageal cancer (squamous cell)	22960999
NONHSAG007898.3	rs10501087	Eating disorders	22911880
NONHSAG007898.3	rs10501087	Established obesity, drive for thinness	22911880
NONHSAG007898.3	rs10501087	Age at menarche	21102462
NONHSAG007898.3	rs10501087	Obesity with early age of onset (age >2)	22484627
NONHSAG007898.3	rs10501087	Waist circumference	19557161
NONHSAG007898.3	rs2203877	Bone mineral density (paediatric, skull)	24945404
NONHSAG007898.3	rs10767658	Body mass index (BMI)	20935630
NONHSAG007898.3	rs1519480	Body mass index (BMI)	20935630
NONHSAG007898.3	rs1519480	Obesity with early age of onset (age >2)	22484627
NONHSAG007898.3	rs7124442	Body mass index (BMI)	20935630
NONHSAG007898.3	rs6265	Body mass index (BMI)	22344219
NONHSAG007898.3	rs6265	Body mass index (BMI)	20935630
NONHSAG007898.3	rs6265	Body mass index (BMI)	23001569
NONHSAG007898.3	rs6265	Body mass index	19079260
NONHSAG007898.3	rs6265	Body mass index (BMI)	19079260
NONHSAG007898.3	rs6265	Nicotine dependence (smoking), ever smokers vs never smokers	22832964
NONHSAG007898.3	rs6265	Nicotine dependence (smoking), ever smokers versus never smokers	20418890
NONHSAG007898.3	rs6265	Smoking behavior	20418890
NONHSAG007898.3	rs6265	Weight	19079260
NONHSAG007898.3	rs6265	Weight	19079260
NONHSAG007898.3	rs6265	Smoking behavior	20418888
NONHSAG007898.3	rs6265	Eating disorders, drive for thinness	22911880
NONHSAG007898.3	rs6265	Obesity with early age of onset (age >2)	22484627
NONHSAG007898.3	rs6265	Obesity (body mass index (BMI))	19079260
NONHSAG007898.3	rs6265	Waist circumference	19557161
NONHSAG007898.3	rs6265	Diastolic blood pressure (DBP)	21909115
NONHSAG007898.3	rs6265	Coronary artery disease (CAD)	23202125
NONHSAG007898.3	rs11030101	Bone mineral density (paediatric, skull)	24945404
NONHSAG007898.3	rs11819808	Body mass index (BMI)	23583978
NONHSAG007898.3	rs11030102	Body mass index (BMI)	20935630
NONHSAG007898.3	rs11030102	Obesity with early age of onset (age >2)	22484627
NONHSAG007898.3	rs11030104	Body mass index	24861553
NONHSAG007898.3	rs11030104	Body mass index (BMI)	20935630
NONHSAG007898.3	rs11030104	Obesity with early age of onset (age >2)	22484627
NONHSAG007898.3	rs1401635	Body mass index (BMI)	20935630
NONHSAG007898.3	rs1401635	Body mass index (BMI)	23001569
NONHSAG007898.3	rs2049045	Body mass index (BMI)	20935630
NONHSAG007898.3	rs2049045	Obesity with early age of onset (age >2)	22484627
NONHSAG007898.3	rs2049045	Diastolic blood pressure (DBP)	21909115
NONHSAG007898.3	rs11030107	Body mass index (BMI)	20935630
NONHSAG007898.3	rs11030107	Obesity with early age of onset (age >2)	22484627
NONHSAG007898.3	rs11030108	Body mass index (BMI)	20935630
NONHSAG007898.3	rs11030108	Obesity with early age of onset (age >2)	22484627
NONHSAG007898.3	rs12291186	HIV-1 disease progression	20041166
NONHSAG007898.3	rs7103411	Body mass index (BMI)	20935630
NONHSAG007898.3	rs7103411	Obesity with early age of onset (age >2)	22484627
NONHSAG007898.3	rs7103411	Diastolic blood pressure (DBP)	21909115
NONHSAG007898.3	rs7103873	Bone mineral density (paediatric, skull)	24945404
NONHSAG007898.3	rs10835211	Obesity class	23563607
NONHSAG007898.3	rs10835211	Body mass index (BMI) >25 kg/m2	23563607
NONHSAG007898.3	rs10835211	Weight	19079260
NONHSAG007898.3	rs10835211	Body mass index (BMI)	19079260
NONHSAG007898.3	rs10835211	Body mass index (BMI)	20935630
NONHSAG007898.3	rs10835211	Gene expression of BDNF in CD4+ lymphocytes	20833654
NONHSAG007898.3	rs10835211	Age at menarche	21102462
NONHSAG007898.3	rs10835211	Smoking behavior	20418888
NONHSAG007898.3	rs10835211	Obesity with early age of onset (age >2)	22484627
NONHSAG007898.3	rs16917237	Body mass index (BMI)	20935630
NONHSAG007898.3	rs16917237	Obesity with early age of onset (age >2)	22484627
NONHSAG007898.3	rs6484320	Body mass index (BMI)	20935630
NONHSAG007898.3	rs6484320	Nicotine dependence (smoking), ever smokers vs never smokers	22832964
NONHSAG007898.3	rs6484320	Nicotine dependence (smoking), ever smokers versus never smokers	20418890
NONHSAG007898.3	rs6484320	Obesity with early age of onset (age >2)	22484627
NONHSAG007898.3	rs1013402	Body mass index (BMI)	20935630
NONHSAG007898.3	rs7127507	Body mass index (BMI)	20935630

Potential Function

GO Number	Description
GO:0032026	response to magnesium ion
GO:1990090	cellular response to nerve growth factor stimulus
GO:0001934	positive regulation of protein phosphorylation
GO:0060252	positive regulation of glial cell proliferation
GO:0042993	positive regulation of transcription factor import into nucleus
GO:0045597	positive regulation of cell differentiation
GO:0051693	actin filament capping
GO:0072347	response to anesthetic
GO:0015842	synaptic vesicle amine transport
GO:0097484	dendrite extension

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