An integrated knowledge database dedicated to ncRNAs, especially lncRNAs.
Detail infomation of NONHSAG008552.1

General info

NONCODE GENE IDNONHSAG008552.1
Chromosomechr11
Start Site62619410
End Site62623483
Strand-
Length4073
Assemblyhg19
ClassLinc;
Other Gene VersionsNONHSAG008552.3

Transcripts in Gene

NONCODE TRANSCRIPT ID
NONHSAT021823.1
NONHSAT021824.1
NONHSAT021825.1
NONHSAT021826.1
NONHSAT021827.1
NONHSAT021828.1
NONHSAT021829.1
NONHSAT021830.1
NONHSAT021831.1
NONHSAT021832.1
NONHSAT021833.1
NONHSAT021834.1
NONHSAT021835.1
NONHSAT021836.1
NONHSAT021837.1
NONHSAT021839.1
NONHSAT021840.1
NONHSAT021841.1
NONHSAT021843.1
NONHSAT021844.1
NONHSAT021846.1
NONHSAT021847.1
NONHSAT021848.1
NONHSAT021851.1
NONHSAT021853.1
NONHSAT021854.1
NONHSAT021856.1
NONHSAT021857.1

Expression Profile (Data Source:)

adiposeadrenalbrainbrain_Rbreastcolon
foreskinheartheart_RHLF_1HLF_2kidney
liverliver_RlunglymphNodeovaryplacenta_R
prostateskeltalMuscletestestestes_RthyroidwhiteBloodCell
NA

Exosome Expression Profile (Data Source: NCBI GEO)

NA

Expression Profile (Data Source: Single Cell)

Conservation Info

  • Chordata
    • Vertebrates
      • Manmals
        • Primates
          • Human
          • Chimp : N/A
          • Gorilla : N/A
          • Orangutan : N/A
          • Rhesus : N/A
        • Rodents
          • Mouse : N/A
          • Rat : N/A
        • Laurasiatheria
          • Pig : N/A
          • Cow : N/A
        • Opossum : N/A
        • Platypus : N/A
      • Birds
        • Chicken : N/A
    • Actinopteryqii
      • Zebrafish : N/A

Note: T = There are transcripts in this region.

Disease related

Disease:

NONCODE IDGene SymbolDisease nameSource DatabaseSource PMID
NONHSAG008552.3ENST00000545440astrocytomaLnc2Cancer26252651
NONHSAG008552.3SNHG1astrocytomaLnc2Cancer26252651
NONHSAG008552.3SNHG1astrocytomaMNDR26252651
NONHSAG008552.3SNHG1non-small cell lung carcinomaLnc2Cancer25818744
NONHSAG008552.3SNHG1hepatocellular carcinomaLnc2Cancer27133041
NONHSAG008552.3SNHG1gastric cancerLncRNAWiki0
NONHSAG008552.3SNHG1non-small cell lung cancerLnc2Cancer25818744

Mutations:

NONCODE IDSNP IDGWAS traitSource PMID
NONHSAG008552.3rs4034Differential splicing of SLC3A2 [probeset 3333716] in lymphoblastoid cell lines19052777
NONHSAG008552.3rs4034Gene expression of NXF1 in peripheral blood monocytes20502693
NONHSAG008552.3rs4034Total cholesterol change with statins20339536
NONHSAG008552.3rs2071036Gene expression of SNORD25 in peripheral blood monocytes20502693

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