Detail infomation of NONHSAG008552.3--NONCODE

Detail infomation of NONHSAG008552.3

General info

NONCODE GENE ID	NONHSAG008552.3
Chromosome	chr11
Start Site	62851873
End Site	62856011
Strand	-
Length	4138
Assembly	hg38
Class	Linc;
Other Gene Versions	NONHSAG008552.1(old version)

Transcripts in Gene

NONCODE TRANSCRIPT ID

Expression Profile (Data Source:Human Body Map)

adipose	adrenal	brain	brain_R	breast	colon
0	0	0.0242469	0.0511442	0	0
foreskin	heart	heart_R	HLF_1	HLF_2	kidney
0	0	0	0	0	0.0102923
liver	liver_R	lung	lymphNode	ovary	placenta_R
0.00635145	0	0.000707748	0	0	0.00987179
prostate	skeltalMuscle	testes	testes_R	thyroid	whiteBloodCell
0	0	0.00900337	0	0	0

Expression profile of NONHSAG008552 in Human tissues

Exosome Expression Profile (Data Source: NCBI GEO)

A431_cellLine (Squamous Cell Carcinoma Cell Line Exosomes)	BJ_cellLine (Foreskin Fibroblast Cell Line Exosomes)	HepG2_cellLine (Hepatocellular Carcinoma Cell Line Exosomes)	HUVEC_cellLine (Human Umbilical Vein Endothelial Cell Line Exosomes)	invasive_NFPAs (Invasive Non-functional Pituitary Adenomas Exosomes)
125.505	86.134	29.3782	122.569	7.33167
non-invasive_NFPAs (Non-invasive Non-functional Pituitary Adenomas Exosomes)	MCF7_cellLine (Human Breast Cancer Cell Line Exosomes)	MDA-MB-231_cellLine (Human Breast Cancer Cell Line Exosomes)	tuberculosis_patients_serum (Active Tuberculosis Patients Serum Exosomes)	normal_people_blood (Normal People Blood Exosomes)
6.40066	5253.54	0	4.26454	3.91732

Expression Profile (Data Source: Single Cell)

Conservation Info

Chordata
- Vertebrates
  - Manmals
    - Primates
      - Human
      - Chimp : chr11( len:4129 )
      - Gorilla : chr11( len:4137 )
      - Orangutan : chr11( len:4302 )
      - Rhesus : N/A
    - Rodents
      - Mouse : N/A
      - Rat : N/A
    - Laurasiatheria
      - Pig : N/A
      - Cow : N/A
    - Opossum : N/A
    - Platypus : N/A
  - Birds
    - Chicken : N/A
- Actinopteryqii
  - Zebrafish : N/A

Note: T = There are transcripts in this region.

Disease related

Disease:

NONCODE ID	Gene Symbol	Disease name	Source Database	Source PMID
NONHSAG008552.3	ENST00000545440	astrocytoma	Lnc2Cancer	26252651
NONHSAG008552.3	SNHG1	astrocytoma	Lnc2Cancer	26252651
NONHSAG008552.3	SNHG1	astrocytoma	MNDR	26252651
NONHSAG008552.3	SNHG1	non-small cell lung carcinoma	Lnc2Cancer	25818744
NONHSAG008552.3	SNHG1	hepatocellular carcinoma	Lnc2Cancer	27133041
NONHSAG008552.3	SNHG1	gastric cancer	LncRNAWiki	0
NONHSAG008552.3	SNHG1	non-small cell lung cancer	Lnc2Cancer	25818744

Mutations:

NONCODE ID	SNP ID	GWAS trait	Source PMID
NONHSAG008552.3	rs4034	Differential splicing of SLC3A2 [probeset 3333716] in lymphoblastoid cell lines	19052777
NONHSAG008552.3	rs4034	Gene expression of NXF1 in peripheral blood monocytes	20502693
NONHSAG008552.3	rs4034	Total cholesterol change with statins	20339536
NONHSAG008552.3	rs2071036	Gene expression of SNORD25 in peripheral blood monocytes	20502693

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