Detail infomation of NONHSAG008898.2--NONCODE

An integrated knowledge database dedicated to ncRNAs, especially lncRNAs.

Detail infomation of NONHSAG008898.2

General info

NONCODE GENE ID	NONHSAG008898.2
Chromosome	chr11
Start Site	69822314
End Site	69829813
Strand	+
Length	6822
Assembly	hg38
Class	Linc;
Other Gene Versions	NONHSAG008898.1(old version)

Transcripts in Gene

NONCODE TRANSCRIPT ID

NONHSAT159351.1

NONHSAT159352.1

NONHSAT159353.1

NONHSAT022618.2

NONHSAT022619.2

Expression Profile (Data Source:Human Body Map)

adipose	adrenal	brain	brain_R	breast	colon
0.000650119	0.00478222	0.003018	0.00741616	0.0158896	0.0225405
foreskin	heart	heart_R	HLF_1	HLF_2	kidney
0	0.0034797	0	0	0.00492488	0.00562378
liver	liver_R	lung	lymphNode	ovary	placenta_R
0.0207332	0	0.00586442	0.0112475	0.00220899	0.00586585
prostate	skeltalMuscle	testes	testes_R	thyroid	whiteBloodCell
0.00614894	0.00679599	0.00763497	0.0116197	0.0076176	0.00870095

Expression profile of NONHSAG008898 in Human tissues

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Exosome Expression Profile (Data Source: NCBI GEO)

A431_cellLine (Squamous Cell Carcinoma Cell Line Exosomes)	BJ_cellLine (Foreskin Fibroblast Cell Line Exosomes)	HepG2_cellLine (Hepatocellular Carcinoma Cell Line Exosomes)	HUVEC_cellLine (Human Umbilical Vein Endothelial Cell Line Exosomes)	invasive_NFPAs (Invasive Non-functional Pituitary Adenomas Exosomes)
0	0	1.68997	0	8.58801
non-invasive_NFPAs (Non-invasive Non-functional Pituitary Adenomas Exosomes)	MCF7_cellLine (Human Breast Cancer Cell Line Exosomes)	MDA-MB-231_cellLine (Human Breast Cancer Cell Line Exosomes)	tuberculosis_patients_serum (Active Tuberculosis Patients Serum Exosomes)	normal_people_blood (Normal People Blood Exosomes)
10.5795	0	0	5.50694	0

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Expression Profile (Data Source: Single Cell)

Conservation Info

Chordata
- Vertebrates
  - Manmals
    - Primates
      - Human
      - Chimp : chr11( len:8173 )
      - Gorilla : N/A
      - Orangutan : chr11( len:7756 )
      - Rhesus : N/A
    - Rodents
      - Mouse : N/A
      - Rat : N/A
    - Laurasiatheria
      - Pig : N/A
      - Cow : N/A
    - Opossum : N/A
    - Platypus : N/A
  - Birds
    - Chicken : N/A
- Actinopteryqii
  - Zebrafish : N/A

Note: T = There are transcripts in this region.

Disease related

Disease:

NONCODE ID	Gene Symbol	Disease name	Source Database	Source PMID
NONHSAG008898.2	CCND1	cervical cancer	Lnc2Cancer	22487937
NONHSAG008898.2	CCND1	tumor	LncRNADisease	22996375

Mutations:

NONCODE ID	SNP ID	GWAS trait	Source PMID
NONHSAG008898.2	rs3895665	Gene expression of FGF3 (probeID ILMN_1723227) in cerebellum in Alzheimer's disease cases and controls	22685416
NONHSAG008898.2	rs3895665	Gene expression of FGF3 (probeID ILMN_1723227) in cerebellum in non-Alzheimer's disease samples	22685416
NONHSAG008898.2	rs3895665	Gene expression of FGF3 (probeID ILMN_1723227) in cerebellum in Alzheimer's disease cases	22685416
NONHSAG008898.2	rs3895665	Gene expression of FGF3 (probeID ILMN_1723227) in cerebellum in Progressive Supranuclear Palsy cases	22685416

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