An integrated knowledge database dedicated to ncRNAs, especially lncRNAs.
Detail infomation of NONHSAG012534.3

General info


NONCODE GENE IDNONHSAG012534.3
Chromosomechr12
Start Site120888868
End Site120980931
Strand-
Length32958
Assemblyhg38
ClassLinc;
Other Gene VersionsNONHSAG012534.2(old version)

Transcripts in Gene


NONCODE TRANSCRIPT ID
NONHSAT164113.1
NONHSAT164114.1
NONHSAT232446.1
NONHSAT232447.1
NONHSAT232448.1
NONHSAT232449.1
NONHSAT031256.2
NONHSAT031257.2
NONHSAT031258.2
NONHSAT031260.2
NONHSAT031261.2
NONHSAT259212.1

Expression Profile (Data Source:Human Body Map)


adiposeadrenalbrainbrain_Rbreastcolon
0.3495380.3939070.2241930.3639920.3706390.219221
foreskinheartheart_RHLF_1HLF_2kidney
0.4538940.4565520.1952430.2580650.3229210.330127
liverliver_RlunglymphNodeovaryplacenta_R
0.2035660.04169190.3083360.2943550.2398140.490962
prostateskeltalMuscletestestestes_RthyroidwhiteBloodCell
0.3081560.4218360.2500770.7188210.360920.248644
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Exosome Expression Profile (Data Source: NCBI GEO)


A431_cellLine
(Squamous Cell Carcinoma Cell Line Exosomes)
BJ_cellLine
(Foreskin Fibroblast Cell Line Exosomes)
HepG2_cellLine
(Hepatocellular Carcinoma Cell Line Exosomes)
HUVEC_cellLine
(Human Umbilical Vein Endothelial Cell Line Exosomes)
invasive_NFPAs
(Invasive Non-functional Pituitary Adenomas Exosomes)
00.06913331.612470.03637868.82084
non-invasive_NFPAs
(Non-invasive Non-functional Pituitary Adenomas Exosomes)
MCF7_cellLine
(Human Breast Cancer Cell Line Exosomes)
MDA-MB-231_cellLine
(Human Breast Cancer Cell Line Exosomes)
tuberculosis_patients_serum
(Active Tuberculosis Patients Serum Exosomes)
normal_people_blood
(Normal People Blood Exosomes)
12.1472006.761830.196734
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Expression Profile (Data Source: Single Cell)


Conservation Info


  • Chordata
    • Vertebrates
      • Manmals
        • Primates
        • Rodents
          • Mouse : N/A
          • Rat : N/A
        • Laurasiatheria
          • Pig : N/A
          • Cow : N/A
        • Opossum : N/A
        • Platypus : N/A
      • Birds
        • Chicken : N/A
    • Actinopteryqii
      • Zebrafish : N/A

Note: T = There are transcripts in this region.


Disease related


Disease:

NONCODE IDGene SymbolDisease nameSource DatabaseSource PMID
NONHSAG012534.3HNF1A-AS1adenocarcinomaLncRNADisease24000294
NONHSAG012534.3HNF1A-AS1adenocarcinoma, oesophageal adenocarcinomaLncRNAWiki0
NONHSAG012534.3HNF1A-AS1stomach cancerLnc2Cancer26472090
NONHSAG012534.3HNF1A-AS1esophagus squamous cell carcinomaLnc2Cancer25608466
NONHSAG012534.3HNF1A-AS1lung adenocarcinomaLnc2Cancer25863539
NONHSAG012534.3HNF1A-AS1esophagus adenocarcinomaLnc2Cancer24000294
NONHSAG012534.3HNF1A-AS1hepatocellular carcinomaLnc2Cancer27084450
NONHSAG012534.3HNF1A-AS1esophageal adenocarcinomaLnc2Cancer24000294
NONHSAG012534.3HNF1A-AS1esophageal squamous cell carcinomaLnc2Cancer25608466
NONHSAG012534.3HNF1A-AS1gastric cancerLnc2Cancer26472090
NONHSAG012534.3HNF1A-AS1oesophageal adenocarcinomaLncRNADisease24000294

Mutations:

NONCODE IDSNP IDGWAS traitSource PMID
NONHSAG012534.3rs10849811Differential splicing of SPPL3 [probeset 3474728] in lymphoblastoid cell lines19052777
NONHSAG012534.3rs7139145Differential splicing of SPPL3 [probeset 3474728] in lymphoblastoid cell lines19052777
NONHSAG012534.3rs1168945Gene expression of SPPL3 in Temporal cortex20485568
NONHSAG012534.3rs1168945Height20881960
NONHSAG012534.3rs7298639Differential splicing of SPPL3 [probeset 3474728] in lymphoblastoid cell lines19052777
NONHSAG012534.3rs3809313Serum metabolite (mass spec peak: 232.2 m/z)23281178
NONHSAG012534.3rs3809314Differential splicing of SPPL3 [probeset 3474728] in lymphoblastoid cell lines19052777
NONHSAG012534.3rs3809314C-reactive protein (CRP)19197348
NONHSAG012534.3rs1151862Differential splicing of SPPL3 [probeset 3474728] in lymphoblastoid cell lines19052777
NONHSAG012534.3rs1151862Gene expression of SPPL3 in Temporal cortex20485568
NONHSAG012534.3rs1151862Height20881960
NONHSAG012534.3rs1151860Differential splicing of SPPL3 [probeset 3474728] in lymphoblastoid cell lines19052777
NONHSAG012534.3rs1151860Triglycerides20066028
NONHSAG012534.3rs11065322Differential splicing of SPPL3 [probeset 3474728] in lymphoblastoid cell lines19052777
NONHSAG012534.3rs1542859Height20881960
NONHSAG012534.3rs1151851C3 / C420037589
NONHSAG012534.3rs1151851C420037589
NONHSAG012534.3rs1151851Height20881960
NONHSAG012534.3rs869781Gene expression of OASL in blood21829388
NONHSAG012534.3rs869781Differential exon level expression of UNQ1887 [probe 3474714] in peripheral blood mononuclear cells19222302
NONHSAG012534.3rs869781Height20881960
NONHSAG012534.3rs1151849C4 / C320037589
NONHSAG012534.3rs1151849C420037589
NONHSAG012534.3rs1151849Differential splicing of SPPL3 [probeset 3474728] in lymphoblastoid cell lines19052777
NONHSAG012534.3rs1151849Gene expression of SPPL3 in Temporal cortex20485568
NONHSAG012534.3rs1151849Height20881960
NONHSAG012534.3rs1105416Gene expression of SPPL3 in Temporal cortex20485568
NONHSAG012534.3rs1105416Gene expression of OASL in blood21829388
NONHSAG012534.3rs1105416Gene expression of AC069234.35 in blood21829388
NONHSAG012534.3rs1105416Height20881960
NONHSAG012534.3rs1696363C4 / C320037589
NONHSAG012534.3rs1696363Gene expression of SPPL3 in Temporal cortex20485568
NONHSAG012534.3rs1696363C420037589
NONHSAG012534.3rs1696363Height20881960
NONHSAG012534.3rs11065324C4 / C320037589
NONHSAG012534.3rs11065324C420037589
NONHSAG012534.3rs11065324Gene expression of SPPL3 in peripheral blood monocytes20502693
NONHSAG012534.3rs11065324Height20881960
NONHSAG012534.3rs1718211Gene expression of SPPL3 in Temporal cortex20485568
NONHSAG012534.3rs1718211Height20881960
NONHSAG012534.3rs1696357C4 / C320037589
NONHSAG012534.3rs1696357C420037589
NONHSAG012534.3rs1696357Height20881960
NONHSAG012534.3rs2650006Gene expression of SPPL3 in Temporal cortex20485568
NONHSAG012534.3rs2650006Height20881960
NONHSAG012534.3rs2649998Gene expression of SPPL3 in Temporal cortex20485568
NONHSAG012534.3rs2649998Height20881960
NONHSAG012534.3rs2454729Gene expression of SPPL3 in Temporal cortex20485568
NONHSAG012534.3rs2454729Height20881960
NONHSAG012534.3rs4767941LDL cholesterol20686565
NONHSAG012534.3rs4767941Total cholesterol20686565
NONHSAG012534.3rs4767941LDL cholesterol19060906
NONHSAG012534.3rs2649996Height20881960
NONHSAG012534.3rs6489785C3 / C420037589
NONHSAG012534.3rs6489785C420037589
NONHSAG012534.3rs6489785Gene expression of SPPL3 in Temporal cortex20485568
NONHSAG012534.3rs6489785Gene expression of SPPL3 (probeID ILMN_1657405) in cerebellum in Alzheimer's disease cases and controls22685416
NONHSAG012534.3rs6489785Longevity20834067
NONHSAG012534.3rs6489785Gene expression of SPPL3 in peripheral blood monocytes20502693
NONHSAG012534.3rs6489785Gene expression of SPPL3 (probeID ILMN_1657405) in temporal cortex in Alzheimer's disease cases and controls22685416
NONHSAG012534.3rs6489785Gene expression of SPPL3 (probeID ILMN_1657405) in cerebellum in non-Alzheimer's disease samples22685416
NONHSAG012534.3rs6489785Height20881960
NONHSAG012534.3rs10774577Height20881960
NONHSAG012534.3rs12299217LDL cholesterol20686565
NONHSAG012534.3rs12299217Systolic blood pressure (SBP)21909115
NONHSAG012534.3rs868795C3 / C420037589
NONHSAG012534.3rs868795C420037589
NONHSAG012534.3rs868795Differential splicing of SPPL3 [probeset 3474728] in lymphoblastoid cell lines19052777
NONHSAG012534.3rs868795Gene expression of COQ5 in peripheral blood monocytes20502693
NONHSAG012534.3rs868795Hypoxanthine:Methylamine21572414
NONHSAG012534.3rs868795Gene expression of MLEC in blood21829388
NONHSAG012534.3rs868795Hypoxanthine:Valine21572414
NONHSAG012534.3rs868795Gene expression of OASL in blood21829388
NONHSAG012534.3rs868795LDL cholesterol20686565
NONHSAG012534.3rs868795Waist Circumference0
NONHSAG012534.3rs868795Total cholesterol20686565
NONHSAG012534.3rs868795LDL cholesterol19060906
NONHSAG012534.3rs1186380LDL cholesterol20686565
NONHSAG012534.3rs1186380LDL cholesterol19060906
NONHSAG012534.3rs1186380Total cholesterol20686565
NONHSAG012534.3rs10849822Differential splicing of SPPL3 [probeset 3474728] in lymphoblastoid cell lines19052777
NONHSAG012534.3rs10849822LDL cholesterol20686565
NONHSAG012534.3rs10849822LDL cholesterol19060906
NONHSAG012534.3rs10849822Total cholesterol20686565
NONHSAG012534.3rs2649999Total cholesterol20686565
NONHSAG012534.3rs2649999LDL cholesterol20686565
NONHSAG012534.3rs2649999C-reactive protein23844046
NONHSAG012534.3rs2649999LDL cholesterol19060906
NONHSAG012534.3rs2649999Serum gamma-glutamyl transferase (GGT) activity (in adults)22010049
NONHSAG012534.3rs2649999Serum gamma-glutamyl transferase (GGT) activity (in adolescents)22010049
NONHSAG012534.3rs7962595LDL cholesterol20686565
NONHSAG012534.3rs7962595LDL cholesterol19060906
NONHSAG012534.3rs7962595Total cholesterol20686565
NONHSAG012534.3rs11065360Coronary artery disease (CAD)23202125
NONHSAG012534.3rs11065360Total cholesterol20686565
NONHSAG012534.3rs11065363LDL cholesterol20686565
NONHSAG012534.3rs11065363LDL cholesterol19060906
NONHSAG012534.3rs11065363Total cholesterol20686565
NONHSAG012534.3rs2650000Gene expression of OASL in blood21829388
NONHSAG012534.3rs2650000LDL cholesterol20686565
NONHSAG012534.3rs2650000Total cholesterol20686565
NONHSAG012534.3rs2650000Gamma-glutamyl transferase (GGT)21943158
NONHSAG012534.3rs2650000C-reactive protein (mg/l)19060910
NONHSAG012534.3rs2650000Inflammation0
NONHSAG012534.3rs2650000Metabolic traits19060910
NONHSAG012534.3rs2650000C-reactive protein23844046
NONHSAG012534.3rs2650000Plasma C-reactive protein (female)18439548
NONHSAG012534.3rs2650000Serum gamma-glutamyl transferase (GGT) activity (in adults)22010049
NONHSAG012534.3rs2650000Insulin processing and secretion23263489
NONHSAG012534.3rs2650000N-glycan levels, in plasma21908519
NONHSAG012534.3rs2650000Desialylated Glycan Peak 721908519
NONHSAG012534.3rs2650000Cardiovascular disease risk factors21943158
NONHSAG012534.3rs2650000Gene expression of C12orf43 in blood21829388
NONHSAG012534.3rs2650000LDL cholesterol19060906
NONHSAG012534.3rs2650000Desialylated Glycan Peak 921908519
NONHSAG012534.3rs2650000N-glycan levels, in plasma21908519
NONHSAG012534.3rs2650000LDL cholesterol21347282
NONHSAG012534.3rs2650000N-glycan levels, in plasma21908519
NONHSAG012534.3rs2650000Antennary fucosylated glycans21908519
NONHSAG012534.3rs2650000Plasma C-reactive protein (female)21647738
NONHSAG012534.3rs2650000Serum gamma-glutamyl transferase (GGT) activity (in adolescents)22010049
NONHSAG012534.3rs2650000Circulating C-reactive protein (CRP)23144326
NONHSAG012534.3rs2650000Coronary artery disease (CAD)23202125
NONHSAG012534.3rs2650000LDL cholesterol21943158
NONHSAG012534.3rs2650000Blood pressure, CVD RF and other traits (body mass index (BMI), waist:hip ratio, renin activity in plasma, aldosterone concentration in plasma, BNP levels in plasma, alcohol consumption)20877124
NONHSAG012534.3rs2650000Diastolic blood pressure (DBP)20877124
NONHSAG012534.3rs26500002-hour glucose tolerance test22885924
NONHSAG012534.3rs2650000Gene expression of HNF1A in normal prepouch ileum23474282
NONHSAG012534.3rs2650000Hypertension (early onset hypertension)22479346
NONHSAG012534.3rs11065374LDL cholesterol20686565
NONHSAG012534.3rs11065374Inflammation0
NONHSAG012534.3rs11065374Total cholesterol20686565
NONHSAG012534.3rs11065374LDL cholesterol19060906
NONHSAG012534.3rs7961554Phe-PTC / C420037589
NONHSAG012534.3rs7961554C420037589
NONHSAG012534.3rs7961554Coronary artery disease (CAD)23202125
NONHSAG012534.3rs11065376LDL cholesterol20686565
NONHSAG012534.3rs11065376Total cholesterol20686565
NONHSAG012534.3rs11065376Gene expression of C12orf43 [transcript NM_022895, probe A_23_P151179] in liver21637794
NONHSAG012534.3rs11065376LDL cholesterol19060906
NONHSAG012534.3rs7305618Plasma C-reactive protein (female)21647738
NONHSAG012534.3rs7305618C-reactive protein21647738
NONHSAG012534.3rs7305618Type 2 diabetes21573907
NONHSAG012534.3rs7305618Type 2 diabetes21573907
NONHSAG012534.3rs7305618C-reactive protein23844046
NONHSAG012534.3rs7305618C-reactive protein24763700
NONHSAG012534.3rs7305618Plasma C-reactive protein (with high pathogen exposure - female)21647738
NONHSAG012534.3rs7305618Blood pressure, CVD RF and other traits (body mass index (BMI), waist:hip ratio, renin activity in plasma, aldosterone concentration in plasma, BNP levels in plasma, alcohol consumption)20877124
NONHSAG012534.3rs7305618Diastolic blood pressure (DBP)20877124
NONHSAG012534.3rs7953249Gene expression of C12orf43 in blood21829388
NONHSAG012534.3rs7953249Plasma C-reactive protein (female)18439548
NONHSAG012534.3rs7953249N-glycan levels, in plasma21908519
NONHSAG012534.3rs7953249Desialylated Glycan Peak 721908519
NONHSAG012534.3rs7953249N-glycan levels, in plasma21908519
NONHSAG012534.3rs7953249Desialylated Glycan Peak 921908519
NONHSAG012534.3rs7953249LDL cholesterol20686565
NONHSAG012534.3rs7953249Total cholesterol20686565
NONHSAG012534.3rs7953249C-reactive protein (CRP)18940312
NONHSAG012534.3rs7953249C-reactive protein23844046
NONHSAG012534.3rs7953249N-glycan levels, in plasma21908519
NONHSAG012534.3rs7953249Antennary fucosylated glycans21908519
NONHSAG012534.3rs7953249Inflammation0
NONHSAG012534.3rs7953249Gene expression of OASL in blood21829388
NONHSAG012534.3rs7953249Gene expression of C12ORF43 in liver22006096
NONHSAG012534.3rs7953249Gamma-glutamyl transferase (GGT)18940312
NONHSAG012534.3rs7953249Plasma N-glycan levels (DG7)21203500
NONHSAG012534.3rs7953249N-glycan levels21203500
NONHSAG012534.3rs7953249Plasma C-reactive protein (female)21647738
NONHSAG012534.3rs7953249Plasma N-glycan levels (DG9)21203500
NONHSAG012534.3rs7953249Plasma N-glycan levels (FUC-A)21203500
NONHSAG012534.3rs7953249C-reactive protein24763700
NONHSAG012534.3rs7953249LDL cholesterol19060906
NONHSAG012534.3rs7953249Plasma N-glycan levels (DG11)21203500
NONHSAG012534.3rs7953249Chronic obstructive pulmonary disease-related biomarkers23144326
NONHSAG012534.3rs7953249Circulating C-reactive protein (CRP)23144326
NONHSAG012534.3rs7953249Serum gamma-glutamyl transferase (GGT) activity (in adolescents)22010049
NONHSAG012534.3rs7953249C-reactive protein (CRP)18439552
NONHSAG012534.3rs7953249Coronary artery disease (CAD)23202125
NONHSAG012534.3rs7953249Plasma N-glycan levels (DG8)21203500
NONHSAG012534.3rs7953249Blood pressure, CVD RF and other traits (body mass index (BMI), waist:hip ratio, renin activity in plasma, aldosterone concentration in plasma, BNP levels in plasma, alcohol consumption)20877124
NONHSAG012534.3rs7953249Diastolic blood pressure (DBP)20877124
NONHSAG012534.3rs7303401Gene expression of C12ORF43 (probeID ILMN_1737818) in breast tumors22522925
NONHSAG012534.3rs7303401Alcohol dependence symptoms21314694
NONHSAG012534.3rs1920792C-reactive protein24763700
NONHSAG012534.3rs2251468LDL cholesterol20686565
NONHSAG012534.3rs2251468Total cholesterol20686565
NONHSAG012534.3rs2251468Homocysteine levels23824729
NONHSAG012534.3rs2251468C-reactive protein23844046
NONHSAG012534.3rs2251468Serum gamma-glutamyl transferase (GGT) activity (in adults)22010049
NONHSAG012534.3rs2251468LDL cholesterol19060906
NONHSAG012534.3rs2251468Plasma C-reactive protein (female)21647738
NONHSAG012534.3rs2251468Serum gamma-glutamyl transferase (GGT) activity (in adolescents)22010049
NONHSAG012534.3rs2251468Coronary artery disease (CAD)23202125
NONHSAG012534.3rs2251468Gene expression of HNF1A in normal prepouch ileum23474282
NONHSAG012534.3rs10774579C-reactive protein23844046
NONHSAG012534.3rs10774579Plasma C-reactive protein (female)21647738
NONHSAG012534.3rs10774579LDL cholesterol20686565
NONHSAG012534.3rs10774579Total cholesterol20686565
NONHSAG012534.3rs10774579Serum gamma-glutamyl transferase (GGT) activity (in adults)22010049
NONHSAG012534.3rs10774579LDL cholesterol19060906
NONHSAG012534.3rs10774579Circulating C-reactive protein (CRP)23144326
NONHSAG012534.3rs10774579Serum gamma-glutamyl transferase (GGT) activity (in adolescents)22010049
NONHSAG012534.3rs10774579Self-reported allergy23817569
NONHSAG012534.3rs10774579HDL cholesterol20339536
NONHSAG012534.3rs7961178Gene expression of C12ORF43 (probeID ILMN_1737818) in breast tumors22522925
NONHSAG012534.3rs12815613Coronary artery disease (CAD)23202125
NONHSAG012534.3rs12815613Self-reported allergy23817569
NONHSAG012534.3rs2254779Gene expression of OASL in blood21829388
NONHSAG012534.3rs2254779Gene expression of C12orf43 [probe ILMN_19852] in osteoblasts treated with BMP221283786
NONHSAG012534.3rs2254779Gene expression of C12orf43 [probe ILMN_19852] in osteoblasts treated with PGE221283786
NONHSAG012534.3rs2254779Gene expression of C12orf43 [probe ILMN_19852] in osteoblasts treated with dexamethasone21283786
NONHSAG012534.3rs2254779Gene expression of C12orf43 in CD4+ lymphocytes20833654
NONHSAG012534.3rs2254779Gene expression of C12orf43 [probe ILMN_19852] in osteoblasts19654370
NONHSAG012534.3rs2254779Gene expression of C12orf43 [probe ILMN_19852] in untreated osteoblasts21283786
NONHSAG012534.3rs2254779Gene expression of C12orf43 in liver18462017
NONHSAG012534.3rs2254779Gene expression of HNF1A///C12orf43 in blood21829388
NONHSAG012534.3rs2255531Plasma C-reactive protein (female)21647738
NONHSAG012534.3rs1169288Gamma-glutamyl transferase (GGT)22001757
NONHSAG012534.3rs1169288LDL cholesterol24097068
NONHSAG012534.3rs1169288Gamma gluatamyl transferase levels22010049
NONHSAG012534.3rs1169288Serum gamma-glutamyl transferase (GGT) activity22010049
NONHSAG012534.3rs1169288Cholesterol, total24097068
NONHSAG012534.3rs1169288LDL cholesterol20686565
NONHSAG012534.3rs1169288LDL cholesterol20686565
NONHSAG012534.3rs1169288Gamma-glutamyl transferase (GGT)21943158
NONHSAG012534.3rs1169288Total cholesterol20686565
NONHSAG012534.3rs1169288Cholesterol, total20686565
NONHSAG012534.3rs1169288Serum gamma-glutamyl transferase (GGT) activity (in adults)22010049
NONHSAG012534.3rs1169288Cardiovascular disease risk factors21943158
NONHSAG012534.3rs1169288LDL cholesterol19060906
NONHSAG012534.3rs1169288Plasma C-reactive protein (female)21647738
NONHSAG012534.3rs1169288C-reactive protein21647738
NONHSAG012534.3rs1169288C-reactive protein (CRP)18439552
NONHSAG012534.3rs1169288Coronary artery disease (CAD)23202125
NONHSAG012534.3rs1169288Serum gamma-glutamyl transferase (GGT) activity (in adolescents)22010049
NONHSAG012534.3rs1169288LDL cholesterol in adults22010049
NONHSAG012534.3rs1169288LDL cholesterol21943158
NONHSAG012534.3rs1169288Relative hand skill in reading disability24068947
NONHSAG012534.3rs1169288Type 2 diabetes22885922
NONHSAG012534.3rs1169288Coronary artery disease (CAD)20686565
NONHSAG012534.3rs1169288C reactive protein (adults)22010049
NONHSAG012534.3rs1169288Total cholesterol23063622
NONHSAG012534.3rs1800574Type 2 diabetes22325160
NONHSAG012534.3rs2244608C-reactive protein (CRP)23505291
NONHSAG012534.3rs2244608LDL cholesterol20686565
NONHSAG012534.3rs2244608Total cholesterol20686565
NONHSAG012534.3rs2244608Serum gamma-glutamyl transferase (GGT) activity (in adults)22010049
NONHSAG012534.3rs2244608C-reactive protein23844046
NONHSAG012534.3rs2244608Total cholesterol23063622
NONHSAG012534.3rs2244608Total cholesterol in females23063622
NONHSAG012534.3rs2244608LDL cholesterol19060906
NONHSAG012534.3rs2244608Urate levels23263486
NONHSAG012534.3rs2244608Serum urate23263486
NONHSAG012534.3rs2244608Coronary artery disease (CAD)23202125
NONHSAG012534.3rs2244608Plasma C-reactive protein (female)21647738
NONHSAG012534.3rs2244608Serum gamma-glutamyl transferase (GGT) activity (in adolescents)22010049