Detail infomation of NONHSAG013000.2--NONCODE

An integrated knowledge database dedicated to ncRNAs, especially lncRNAs.

Detail infomation of NONHSAG013000.2

General info

NONCODE GENE ID	NONHSAG013000.2
Chromosome	chr13
Start Site	23505261
End Site	23525485
Strand	+
Length	4178
Assembly	hg38
Class	Linc;
Other Gene Versions	NONHSAG013000.1(old version)

Transcripts in Gene

NONCODE TRANSCRIPT ID

NONHSAT165356.1

NONHSAT032469.2

NONHSAT032470.2

NONHSAT032471.2

Expression Profile (Data Source:Human Body Map)

adipose	adrenal	brain	brain_R	breast	colon
0.0017759	0.000657961	0.000865832	0	0.00406054	0
foreskin	heart	heart_R	HLF_1	HLF_2	kidney
0	0	0.0136013	0	0.00126192	0.0111853
liver	liver_R	lung	lymphNode	ovary	placenta_R
0	0	0.000437916	0	0.0328117	0.000814361
prostate	skeltalMuscle	testes	testes_R	thyroid	whiteBloodCell
0	0	0.00534696	0.00963612	0.000298622	0

Expression profile of NONHSAG013000 in Human tissues

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Exosome Expression Profile (Data Source: NCBI GEO)

A431_cellLine (Squamous Cell Carcinoma Cell Line Exosomes)	BJ_cellLine (Foreskin Fibroblast Cell Line Exosomes)	HepG2_cellLine (Hepatocellular Carcinoma Cell Line Exosomes)	HUVEC_cellLine (Human Umbilical Vein Endothelial Cell Line Exosomes)	invasive_NFPAs (Invasive Non-functional Pituitary Adenomas Exosomes)
0	1.0351	1.9798	0	5.55706
non-invasive_NFPAs (Non-invasive Non-functional Pituitary Adenomas Exosomes)	MCF7_cellLine (Human Breast Cancer Cell Line Exosomes)	MDA-MB-231_cellLine (Human Breast Cancer Cell Line Exosomes)	tuberculosis_patients_serum (Active Tuberculosis Patients Serum Exosomes)	normal_people_blood (Normal People Blood Exosomes)
3.9296	0	0	6.33512	0

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Expression Profile (Data Source: Single Cell)

Conservation Info

Chordata
- Vertebrates
  - Manmals
    - Primates
      - Human
      - Chimp : chr13( len:20260 )
      - Gorilla : N/A
      - Orangutan : N/A
      - Rhesus : N/A
    - Rodents
      - Mouse : N/A
      - Rat : N/A
    - Laurasiatheria
      - Pig : N/A
      - Cow : N/A
    - Opossum : N/A
    - Platypus : N/A
  - Birds
    - Chicken : N/A
- Actinopteryqii
  - Zebrafish : N/A

Note: T = There are transcripts in this region.

Disease related

Disease:

NONCODE ID	Gene Symbol	Disease name	Source Database	Source PMID
NONHSAG013000.2	TNFRSF19	ovarian cancer	Lnc2Cancer	27193186

Mutations:

NONCODE ID	SNP ID	GWAS trait	Source PMID
NONHSAG013000.2	rs6490802	Autism with low IQ	20663923
NONHSAG013000.2	rs7332817	Major depressive disorder	22472876
NONHSAG013000.2	rs7332817	Major depressive disorder (narrow definition) (males)	20038947
NONHSAG013000.2	rs7332817	Major depressive disorder (broad definition) (males)	20038947
NONHSAG013000.2	rs7332817	Major depressive disorder (broad definition)	20038947
NONHSAG013000.2	rs1572067	Gene expression of SLC26A10 in peripheral blood monocytes	20502693
NONHSAG013000.2	rs1572067	Major depressive disorder (narrow definition) (males)	20038947
NONHSAG013000.2	rs1572067	Major depressive disorder (broad definition) (males)	20038947
NONHSAG013000.2	rs1572067	Major depressive disorder (broad definition)	20038947

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