An integrated knowledge database dedicated to ncRNAs, especially lncRNAs.
Detail infomation of NONHSAG016307.3

General info

NONCODE GENE IDNONHSAG016307.3
Chromosomechr15
Start Site24978406
End Site25419462
Strand+
Length88073
Assemblyhg38
ClassLinc;
Other Gene VersionsNONHSAG016307.2(old version)

Transcripts in Gene

NONCODE TRANSCRIPT ID
NONHSAT170544.1
NONHSAT170545.1
NONHSAT170546.1
NONHSAT170547.1
NONHSAT170548.1
NONHSAT170549.1
NONHSAT170551.1
NONHSAT170552.1
NONHSAT170553.1
NONHSAT170554.1
NONHSAT170555.1
NONHSAT170556.1
NONHSAT170557.1
NONHSAT170558.1
NONHSAT234670.1
NONHSAT234671.1
NONHSAT234672.1
NONHSAT234673.1
NONHSAT234674.1
NONHSAT234675.1
NONHSAT234676.1
NONHSAT234677.1
NONHSAT040965.2
NONHSAT040966.2
NONHSAT040969.2
NONHSAT040970.2
NONHSAT040974.2
NONHSAT040978.2
NONHSAT040979.2
NONHSAT040980.2
NONHSAT040981.2
NONHSAT040982.2
NONHSAT040983.2
NONHSAT040985.2
NONHSAT040986.2
NONHSAT040987.2
NONHSAT040988.2
NONHSAT040989.2
NONHSAT040990.2
NONHSAT040991.2
NONHSAT040998.2
NONHSAT041000.2
NONHSAT041001.2
NONHSAT041004.2
NONHSAT041006.2
NONHSAT041007.2
NONHSAT041008.2
NONHSAT041009.2
NONHSAT041012.2
NONHSAT041023.2
NONHSAT041027.2
NONHSAT041028.2
NONHSAT041031.2
NONHSAT041032.2
NONHSAT041034.2
NONHSAT041047.2
NONHSAT041054.2
NONHSAT041055.2
NONHSAT041056.2
NONHSAT041057.2
NONHSAT041058.2
NONHSAT041059.2
NONHSAT041060.2
NONHSAT041061.2
NONHSAT041062.2
NONHSAT041063.2
NONHSAT041064.2
NONHSAT041065.2
NONHSAT041066.2
NONHSAT041067.2
NONHSAT041076.2
NONHSAT041077.2
NONHSAT041081.2
NONHSAT041082.2
NONHSAT041085.2
NONHSAT041087.2
NONHSAT041091.2
NONHSAT041093.2
NONHSAT041096.2
NONHSAT041098.2
NONHSAT041104.2
NONHSAT041106.2
NONHSAT041109.2
NONHSAT041110.2
NONHSAT041125.2
NONHSAT041128.2
NONHSAT041132.2
NONHSAT041137.2
NONHSAT041139.2
NONHSAT041140.2
NONHSAT041145.2
NONHSAT259282.1
NONHSAT259283.1

Expression Profile (Data Source:Human Body Map)

adiposeadrenalbrainbrain_Rbreastcolon
0.01003020.06778990.1757190.1914590.02780260.0191449
foreskinheartheart_RHLF_1HLF_2kidney
0.009685830.1504280.0561560.08431120.08600960.0733461
liverliver_RlunglymphNodeovaryplacenta_R
0.008447320.00379820.03056720.04178830.07258870.0107108
prostateskeltalMuscletestestestes_RthyroidwhiteBloodCell
0.04765770.01402620.04484410.1949470.2635770.0136594
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Exosome Expression Profile (Data Source: NCBI GEO)

A431_cellLine
(Squamous Cell Carcinoma Cell Line Exosomes)		BJ_cellLine
(Foreskin Fibroblast Cell Line Exosomes)		HepG2_cellLine
(Hepatocellular Carcinoma Cell Line Exosomes)		HUVEC_cellLine
(Human Umbilical Vein Endothelial Cell Line Exosomes)		invasive_NFPAs
(Invasive Non-functional Pituitary Adenomas Exosomes)
1.2541716.99759.8127319.22364.67253
non-invasive_NFPAs
(Non-invasive Non-functional Pituitary Adenomas Exosomes)		MCF7_cellLine
(Human Breast Cancer Cell Line Exosomes)		MDA-MB-231_cellLine
(Human Breast Cancer Cell Line Exosomes)		tuberculosis_patients_serum
(Active Tuberculosis Patients Serum Exosomes)		normal_people_blood
(Normal People Blood Exosomes)
4.98616005.725942.26382
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Expression Profile (Data Source: Single Cell)

Conservation Info

  • Chordata
    • Vertebrates
      • Manmals
        • Primates
          • Human
          • Chimp : N/A
          • Gorilla : N/A
          • Orangutan : N/A
          • Rhesus : N/A
        • Rodents
          • Mouse : N/A
          • Rat : N/A
        • Laurasiatheria
          • Pig : N/A
          • Cow : N/A
        • Opossum : N/A
        • Platypus : N/A
      • Birds
        • Chicken : N/A
    • Actinopteryqii
      • Zebrafish : N/A

Note: T = There are transcripts in this region.

Disease related

Disease:

NONCODE IDGene SymbolDisease nameSource DatabaseSource PMID
NONHSAG016307.3IPWPrader-Willi syndrome24816254
NONHSAG016307.3IPWPrader-Willi syndromeMNDR9063754
NONHSAG016307.3IPWPrader-Willi syndromeLncRNADisease23791884
NONHSAG016307.3IPWPrader-Willi syndromeLncRNADisease7849716
NONHSAG016307.3IPWPrader-Willi syndromeLncRNAWiki0
NONHSAG016307.3IPWPrader-Willi syndromeLncRNADisease24816254
NONHSAG016307.3IPWPrader-Willi syndromeLncRNADisease9063754
NONHSAG016307.3SNHG14Prader-WilliLncRNAWiki0

Mutations:

NONCODE IDSNP IDGWAS traitSource PMID
NONHSAG016307.3rs11637528Autism20663923
NONHSAG016307.3rs11637528Microalbuminuria21355061
NONHSAG016307.3rs2732029Gene expression of SNRPN in peripheral blood monocytes20502693
NONHSAG016307.3rs2732029Gene expression of SNURF in peripheral blood monocytes20502693
NONHSAG016307.3rs17786183Celiac disease23936387
NONHSAG016307.3rs2732031Gene expression of SNRPN in peripheral blood monocytes20502693
NONHSAG016307.3rs2732031Gene expression of SNURF in peripheral blood monocytes20502693
NONHSAG016307.3rs2732032Microalbuminuria21355061
NONHSAG016307.3rs17114990Salmonella-induced pyroptosis22837397
NONHSAG016307.3rs2732036Microalbuminuria21355061
NONHSAG016307.3rs2732037Microalbuminuria21355061
NONHSAG016307.3rs2732038Microalbuminuria21355061
NONHSAG016307.3rs975699Gene expression of SNRPN///SNURF in blood21829388
NONHSAG016307.3rs975699Gene expression of SNRPN in blood21829388
NONHSAG016307.3rs2554443Gene expression of SNRPN in peripheral blood monocytes20502693
NONHSAG016307.3rs2554443Gene expression of SNURF in peripheral blood monocytes20502693
NONHSAG016307.3rs11632937Microalbuminuria21355061
NONHSAG016307.3rs8038349Salmonella-induced pyroptosis22837397
NONHSAG016307.3rs2732041Microalbuminuria21355061
NONHSAG016307.3rs2732043Microalbuminuria21355061
NONHSAG016307.3rs1030389Gene expression of SNRPN in peripheral blood monocytes20502693
NONHSAG016307.3rs1030389Gene expression of SNURF in peripheral blood monocytes20502693
NONHSAG016307.3rs1045935Gene expression of SNRPN in peripheral blood monocytes20502693
NONHSAG016307.3rs1045935Gene expression of SNURF in peripheral blood monocytes20502693
NONHSAG016307.3rs1812905Gene expression of SNORD116-18 in normal prepouch ileum23474282
NONHSAG016307.3rs2732023Gene expression of SNORD116-18 in normal prepouch ileum23474282
NONHSAG016307.3rs2732021HOMA-B20081858
NONHSAG016307.3rs2732021Microalbuminuria21355061
NONHSAG016307.3rs11634505Gene expression of SNRPN in peripheral blood monocytes20502693
NONHSAG016307.3rs11634505Gene expression of SNURF in peripheral blood monocytes20502693
NONHSAG016307.3rs11634716Gene expression of SNRPN in peripheral blood monocytes20502693
NONHSAG016307.3rs11634716Gene expression of SNRPN///SNURF in blood21829388
NONHSAG016307.3rs11634716Gene expression of SNURF in peripheral blood monocytes20502693
NONHSAG016307.3rs11634716Gene expression of SNRPN in blood21829388
NONHSAG016307.3rs17115143Gene expression of SNRPN in peripheral blood monocytes20502693
NONHSAG016307.3rs17115143Gene expression of SNURF in peripheral blood monocytes20502693
NONHSAG016307.3rs17115143Gene expression of SNORD116-18 in normal prepouch ileum23474282
NONHSAG016307.3rs17115143Gene expression of CMTM1 in peripheral blood monocytes20502693
NONHSAG016307.3rs17115143Gene expression of INF2 in peripheral blood monocytes20502693
NONHSAG016307.3rs1426196Gene expression of SNORD116-4 (probeID ILMN_2067520) in temporal cortex in Alzheimer's disease cases and controls22685416
NONHSAG016307.3rs1426196Gene expression of SNORD116-4 (probeID ILMN_2067520) in temporal cortex in Alzheimer's disease cases22685416
NONHSAG016307.3rs6576402Waist circumference in controls17463246
NONHSAG016307.3rs6576402Type 2 diabetes17463246
NONHSAG016307.3rs11636448HOMA-B20081858
NONHSAG016307.3rs11636488HOMA-B20081858
NONHSAG016307.3rs4906699Gene expression of SNRPN in peripheral blood monocytes20502693
NONHSAG016307.3rs4906699Gene expression of SNORD116-18 in normal prepouch ileum23474282
NONHSAG016307.3rs4906699Gene expression of SNURF in peripheral blood monocytes20502693
NONHSAG016307.3rs12441340Gene expression of SNORD116-18 in normal prepouch ileum23474282
NONHSAG016307.3rs12441340Autism20663923
NONHSAG016307.3rs12441340Gene expression of SNRPN///SNURF in blood21829388
NONHSAG016307.3rs4344720Allele-specific Expression Patterns in human glioblastoma cell line U87MG22467206
NONHSAG016307.3rs4344720Gene expression of SNRPN///SNURF in blood21829388
NONHSAG016307.3rs17115176Gene expression of OR56B4 in peripheral blood monocytes20502693
NONHSAG016307.3rs11161166Gene expression of SNRPN in peripheral blood monocytes20502693
NONHSAG016307.3rs11161166Gene expression of SNURF in peripheral blood monocytes20502693
NONHSAG016307.3rs1124767Autism20663923
NONHSAG016307.3rs17115191Gene expression of OR56B4 in peripheral blood monocytes20502693
NONHSAG016307.3rs17115191Anti-TNF treatment response in rheumatoid arthritis (by DAS-28 score change at 3 months)23233654
NONHSAG016307.3rs17115191Methotrexate clearance (acute lymphoblastic leukemia)23233662
NONHSAG016307.3rs17115198Anti-TNF treatment response in rheumatoid arthritis (by DAS-28 score change at 3 months)23233654
NONHSAG016307.3rs17115198Methotrexate clearance (acute lymphoblastic leukemia)23233662
NONHSAG016307.3rs3803326Gene expression of SNRPN in peripheral blood monocytes20502693
NONHSAG016307.3rs3803326Gene expression of SNURF in peripheral blood monocytes20502693
NONHSAG016307.3rs3803326Autism20663923
NONHSAG016307.3rs7171528Anti-TNF treatment response in rheumatoid arthritis (by DAS-28 score change at 3 months)23233654
NONHSAG016307.3rs7171937Anti-TNF treatment response in rheumatoid arthritis (by DAS-28 score change at 3 months)23233654
NONHSAG016307.3rs1477599Gene expression of OR56B4 in peripheral blood monocytes20502693
NONHSAG016307.3rs1477599Anti-TNF treatment response in rheumatoid arthritis (by DAS-28 score change at 3 months)23233654
NONHSAG016307.3rs1549477Gene expression of SNORD116-18 in normal prepouch ileum23474282
NONHSAG016307.3rs1549477Autism20663923
NONHSAG016307.3rs1549478Autism20663923
NONHSAG016307.3rs6576404Multiple complex diseases17554300
NONHSAG016307.3rs6576404Coronary artery disease (CAD), combined control dataset, gender differentiated17554300
NONHSAG016307.3rs3825770Anti-TNF treatment response in rheumatoid arthritis (by DAS-28 score change at 3 months)23233654
NONHSAG016307.3rs3825770Methotrexate clearance (acute lymphoblastic leukemia)23233662
NONHSAG016307.3rs3863396Gene expression of SNORD116-18 in normal prepouch ileum23474282
NONHSAG016307.3rs3863396Gene expression of SNORD116-27 in normal prepouch ileum23474282
NONHSAG016307.3rs1477597Anti-TNF treatment response in rheumatoid arthritis (by DAS-28 score change at 3 months)23233654
NONHSAG016307.3rs1477597Methotrexate clearance (acute lymphoblastic leukemia)23233662
NONHSAG016307.3rs1477598Methotrexate clearance (acute lymphoblastic leukemia)23233662
NONHSAG016307.3rs1477598Anti-TNF treatment response in rheumatoid arthritis (by DAS-28 score change at 3 months)23233654
NONHSAG016307.3rs77873907Allele-specific Expression Patterns in human glioblastoma cell line U87MG22467206
NONHSAG016307.3rs7176900Anti-TNF treatment response in rheumatoid arthritis (by DAS-28 score change at 3 months)23233654
NONHSAG016307.3rs7176900Methotrexate clearance (acute lymphoblastic leukemia)23233662
NONHSAG016307.3rs7172180Anti-TNF treatment response in rheumatoid arthritis (by DAS-28 score change at 3 months)23233654
NONHSAG016307.3rs7172180Methotrexate clearance (acute lymphoblastic leukemia)23233662
NONHSAG016307.3rs7170404Methotrexate clearance (acute lymphoblastic leukemia)23233662
NONHSAG016307.3rs7170404Anti-TNF treatment response in rheumatoid arthritis (by DAS-28 score change at 3 months)23233654
NONHSAG016307.3rs17115224Anti-TNF treatment response in rheumatoid arthritis (by DAS-28 score change at 3 months)23233654
NONHSAG016307.3rs17115224Methotrexate clearance (acute lymphoblastic leukemia)23233662
NONHSAG016307.3rs8034408Methotrexate clearance (acute lymphoblastic leukemia)23233662
NONHSAG016307.3rs8034408Anti-TNF treatment response in rheumatoid arthritis (by DAS-28 score change at 3 months)23233654
NONHSAG016307.3rs17115228Gene expression of CLCN2 in peripheral blood monocytes20502693
NONHSAG016307.3rs12594112Gene expression of SNORD116-18 in normal prepouch ileum23474282
NONHSAG016307.3rs8033133Gene expression of SNORD116-18 in normal prepouch ileum23474282
NONHSAG016307.3rs8033133Gene expression of SNORD116-27 in normal prepouch ileum23474282
NONHSAG016307.3rs7162559Gene expression of SNRPN in peripheral blood monocytes20502693
NONHSAG016307.3rs7162559Gene expression of FAM12A in peripheral blood monocytes20502693
NONHSAG016307.3rs7168122Methotrexate clearance (acute lymphoblastic leukemia)23233662
NONHSAG016307.3rs7168122Anti-TNF treatment response in rheumatoid arthritis (by DAS-28 score change at 3 months)23233654
NONHSAG016307.3rs8030752Gene expression of PIK3R5 in peripheral blood monocytes20502693
NONHSAG016307.3rs8030752Type 2 diabetes17463246
NONHSAG016307.3rs8030752Waist circumference in controls17463246
NONHSAG016307.3rs8036401Crohn's disease, combined control dataset, gender differentiated17554300
NONHSAG016307.3rs8036401Multiple complex diseases17554300
NONHSAG016307.3rs17115258Methotrexate clearance (acute lymphoblastic leukemia)23233662
NONHSAG016307.3rs17115258Anti-TNF treatment response in rheumatoid arthritis (by DAS-28 score change at 3 months)23233654
NONHSAG016307.3rs691Triglycerides20686565
NONHSAG016307.3rs691Fat mass17463246
NONHSAG016307.3rs691Type 2 diabetes17463246
NONHSAG016307.3rs2714714Gene expression of MYBBP1A in peripheral blood monocytes20502693
NONHSAG016307.3rs2714714Gene expression of SNRPN///SNURF in blood21829388
NONHSAG016307.3rs2714714Triglycerides20686565
NONHSAG016307.3rs2714717Gene expression of IPW in liver18462017
NONHSAG016307.3rs2249378Gene expression of DPPA2 in peripheral blood monocytes20502693
NONHSAG016307.3rs2249378Gene expression of SNRPN///SNURF in blood21829388
NONHSAG016307.3rs7497265Obsessive-compulsive disorder (OCD)22889921
NONHSAG016307.3rs11856501HDL cholesterol change with statins20031582
NONHSAG016307.3rs2739831HDL cholesterol change with statins20031582
NONHSAG016307.3rs6576414Autism with low IQ20663923
NONHSAG016307.3rs17115375Birth weight23202124
NONHSAG016307.3rs2739802Gene expression of CLRN1 in peripheral blood monocytes20502693
NONHSAG016307.3rs2714735Gene expression of CLRN1 in peripheral blood monocytes20502693
NONHSAG016307.3rs11857240Adiponectin levels22479202
NONHSAG016307.3rs17068Transmission distortion22377632
NONHSAG016307.3rs17068Paternal transmission distortion22377632
NONHSAG016307.3rs7176331Gene expression of IQWD1 in peripheral blood monocytes20502693
NONHSAG016307.3rs4445877Obsessive-compulsive disorder (OCD)22889921
NONHSAG016307.3rs8025093Obesity-related traits23251661
NONHSAG016307.3rs8025093Bone mineral density (BMD) (g/cm2) (in children)23251661
NONHSAG016307.3rs7166686C2 / PC aa C32:120037589
NONHSAG016307.3rs7166686C18:220037589
NONHSAG016307.3rs4906708Gene expression of IQWD1 in peripheral blood monocytes20502693
NONHSAG016307.3rs8039641Gene expression of CLRN1 in peripheral blood monocytes20502693

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