NONCODE TRANSCRIPT ID NONHSAT005302.1 NONCODE Gene ID NONHSAG002460.3 Chromosome chr1 Start Site 112956460 End Site 112975105 Strand + Exon Number 3 CNCI Score -0.0245760 Length 7666 Assembly hg38 Other transcript Versions NONHSAT005302.1 (old version)
Sequence
>NONHSAT005302.1 AGACTCGCCCTTGGGTCCCTGTCTGACGAGCTCTAGGCAATCTGCCCTCGTTCGGGACACAACCATCGGTCTCACCCCTCAGTTTCTGCCAGAGAAAAAGGAAAAGTCACCGAGAGGCCTGACCCTGACGGGTGGGGGAGATGCGCGTGCGGAGTAGCGGGAAGCGACTGAGGAGCGGGGAATGGGCAGCATTTGAATGGATGCGGGTGCCGCTGGCACCCGGGAAGACGCTGGGGGCCGGCGCTgtagagccgggcatgggctgggatgtgtttggattccaatccgggcctgacaccagttcagtgacctcgggaagttccccaaccctccgggcctgtttcctccctctgaagtggcgacagtagtagaaccgacctcgtaggctcatcgggaggtcctgatgggagaacccatgcaacttgccaccatagagccaggcccgcggCGGTTGGCGCCTGGTGGGTATTAAAGACGAGTCGGGAAAGAAGAGCAGGTTGATAGACTGGATGCTGCTATGGTAATCTGCCTCAGGAAAATGCCGGACTGTTGTTTGCAAGCTGGTTAAGTGAGCAAATCTTGGGAAGATTTCAAGTCATGGAATAaggccataccctgtgggtagggtataaaggtttccctctatatagtaggtgttcttattatcagtcattcaaagaaaaagagaatcctCACCAGAAAATCTTGGAACATAGAACAGATGGAAGGTGGCACTTCTGGATATGCCTTTTTACATCTGAACTTGGAAGAGTTAAGAATTGTTGAAGGCCCTTCTCACTGATCAGGGGAAATAGCTTCTGTCACAGAGCTGCCTACTCCAGGAGAACCAAAAATGAAAGTAAACACTCATATTTTGTAAGTCTGTTCCTCAACTTCCATCAATCAAGTTTAATCTAAATCAAGGATTCAAACTGAGAAGCATTTAAGGACCAAGAAAAAGTTAATTAGCCCAGTATAAGTCAACAAGAAATGGTAAGCAGTATGGAGGAAAAGAAGTGCCACACCCTTCTAGGCATCCAAATTCAAGCATTTACAATGTACTTCATGAAGCAGTACCCTATACAGCACTAATAACAGCCCAAACTTGCTTGACATTTCTACATAACACATTATTCATTAATTCAGAAGAAAAATAGAATTCTTAAAACTCCTAACTTTATTTTTAATTAATATAAAGGAGGAACCAACAACAACAAAAAATTGTGTGGGAGTTAGAAAATAAGGACTAGGCGCctgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgcggtgggcagaacacgaggtcaggagattgaggccatcctggctaacacggtgaaaccccgtctttactaaaaaatagaaaaaattagctgggcgtggtggcgggcgcctgtagtcgcagctactctggaggcttgaggcaggagaatggcgtgaacctgggaggcggagcttgcagtgagccaagatcgcgccactacactccagcctgggcgacagagcgacactctgtctcaaaaaaaaaaaaaggaaaaaaaGGACTAGGCAGGCAGATGTGGGGTGGGGCAAACAAAACATGGCAGCCAGCAGACCAGTCTATTTCAGCATAGTCTCTGCTGCAGTATTTAAGAAATAGGTAGAGCCAgccaggcgcggtggttcacgcctgtaatcccagtactttgggaggccgaggcgggcggatcacctgaggtctggagttcgagaccagcctgaccaacatggagaaaccgcgtctctactaaaaatacaaaattagccaggcgtggtggcacaggcctgtaatcccagctacttgggaggctgaggcaggagaatcacttgaacccagaaggcggaggttgtggtgagcccagatcgtgccattgcactccatcctgggcaacaagagtgaaattccccatctcaaaaacaaaGAGATAGGTAGAgctggccgtggtggctcacgcctgtaatcccagaaggctgagttcggtggatcacttgagatcaagagtttgagactagcctggccaacatggtgaaaccccatctctgctaaaaaaaaaaaaaaaaatacaaaaattagtcgggcatggtggcaggcatctgtaatcgcagctacttgggaggctgaggcaggagaatcgcttgaaccccagaggcagaggttgcagtgagttgagatcgcgtcactgcagtccaacgacagagtaagactctgtcgcaaaaaaaaaaaaaaaaaaaaaGTAGAAAGCAGAACGCTTCTTCCCGGTGCCAAGGGGGATTTATGAAAGATCCCCAAGGAAGAGTTGAATATCAGAATGAGGGTCATTTTGGCAGTCCCATCCCTGTATGGAGACAGTCCTTTCGTTGTTACTTTTGGCAGATGAGGATTTGAGTTTAAGAGACCTGGTTGggggggaggggggagggatagctttgggagatatacctaatgctaaatgacgagttaatgggtgcagcacaccagcatggcacatgtatacatatgtaaccaacctgcacattgtgcacatgtaccctaaaacttaaagtataataataataaaaTAAAAAAAAAAGAGAGACCTGGTGGATTTCCGTACAACTTCATAATTTCCCCCTATCCAAGACCCATGGTTCCATTTTTGTCACCGTGGCCACAGTGGCTGAAATGGCTCACTTCATCTTTTGCACTAAACAGCCTTCAGCCCCACACTGCACCGCTAAATGGACAAGTTCTTTTTTCCCTAGTGTCTTAAATTCATGGCCTCAGTCTGAGGCCTTTAGTTTTATACTGCTTTGGGAGAGTCCTCTTTACAGTCTTAGAGATATACATATACCTCTTACTGTTTACCACCACTAATTTAATAGCAAGAAAGAAACTGGAAATCTTGTAGGAATACTCTGTTCCtttttttgttttttgagacgaagtctcactcttgtcaccaggctggagtgcaatggcgcaatcttgggatcttggttcactgcaacctctgcctcccaggttcaagtaattctcctgcctcagcctccccagtaactgggattataggtgcctgccaacacgcctggctaatttttatatttttagtagagacgaggtttcaccatgttggccaggctggtctcgaacacctgaactcaggttatctgcctgcctcggcctcccagtgtgctgggattacaagtgtgagccactgcgcctggccAAGGAACACTCTTTGTTCTATGCTACCTACTAGGACAGCTAGTCTACTCAGTTACCCCAAAACCAAAAGGATAGTAACTCAACAAGCTCAGAATACACCATTCTGCTTGCAGCCATTGTTTTCACCACTACCCCATTTCCCCCTGCACACATAGCTCATTACCTTGTCACATGTACACTTACTATAGTCACAGCAGGAGCTAGAATCTGGAGATGTTACATGCCACACAAGAGGTCAGTGAGAAGCACAAAACCATACATTGCAAATGGGTAACATATCAGTGTAGCCATCCAAGCAGAGGATTAGGTATGGCCTTCATCTCATGTTCCCATTAGGCTCAGATGGGCTAGATAATGGGGTTTTGCTCCTGTTTCCAATTCAAAGATAGTCAACCTGGGAGCTTTCTAACTCTATCATATGTATTTCATTTGTTTCACCAGTTACTCATTTGATCAACCCAGGGAAGACCATATCATGAATGAAACACAGCCCAAGTATGCTTTAACCATAACGTGGGAGTGCATAATTCAGGCTACCAAGACCATTTAACAGAATCCAGTGGAATGAGGGAAGTCTGGACTACAGGAGTTAGTGGGGGAATTCTCAGTCACTGCAACCATGCTTCTAAACAAAGGCCTTCACCAAGAACCTAGGGCAATCTTATTCCATCTGCCAGAACTTATAGGGATATCACTAAATTATGCTTAGTCAAAATTGGGTAATTTGTAGTTTATAAATACTATAAAACTGATATTTAAATCTAGGTCTACTTAATTCCTAGCTTCTGTTCTTAAGTGCTAGATTATTTTGATTCATTTATTTTGTTCAAAATCTTGACGTTATAGGAAAGGATGGGGATGAGGAGGATGATGAGGCAGGAAAATGCAGAACTGTTTCATAGtcccagcgctgaacctttgtacaggctgtttcttcttcatataaagcacttcttggccaggcgtggtggctcacacctataatcccagctctttgagaggctgaggtgggcgggtcacttgaggtcaggagttcgagacaagcatggccaacatggtgaaacgcaatctctactaaaaatacaaaaaaattagcccgatgtggtagtgtgcctgtagtcccagctacttggggggctgaggcaggagaatcgtttgaaccagggaggcagaggttgcagtgagccgagatcgtgccactgcactctagcctgggtgacagagcgagactccatctcaaaaaaataaacaaattaaaaaaataaaaagcacttcttccttccacttgataaactGTGTGCAGAATAACATGGAGATGGAGGAGAGGCAGGTAGATTAAGGGGGAGCAGTTTTAGTAattctatgattcagacctctttttaattcagctttcctgctaattaatgtaaattagtaaggtttCTgctgggcgcagtggctcatgcctgtaatcccaacactttgggaggccaaggcgggtggatcacgaggtcaagagatcgagaccatgctggctaacatggtgaaacctcgtctctactaaaaatacaaaaaaaaattcgccaggcgtggtggcaggcgcctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgaacctgggaaccagagcttgcagtgagccgagatcacacctctgcactccagcctgagcgacatagtgagaccccgtctcaaaaaaaaaaaaaaTTAATAAGGTTTCATAATTATTATATTTACCAACCAGGTTCTTTCTACATAATTATTGTTTACCTTCTAATAAATTACTTACAAAGGCCACCTACAAATCCAAATTATATACAAAACGTTTCATTTCCTATTTCCTTCCCAGGGATGCATAATTATTTTGGAAAAATCAGTGGCAgctgggcacggtggctcatgcctgtaatcccagcactctgggaggccaaggcaggcggatccatctgaggtcaggagttcaaaaccagcctggccaacatagtaaaaccccatccttactaaaaatacaaaaattagctgggcgttctggtgcacgcctatagtcccagctactcaggaggctaaggcaggagaatcgcttgaacccaggaggcagagatcgcagtgagctgagatggtgccactgcactccagcctgggtgacagagcgagactgtctcttaggaaaaaaaaaaaaaaaaTCATTGGCTTGTAAGTTAAAATCTTTATCTTGCTCTACCTTCTCTGGAATACCTACATCTCTGATGTTTTTTTAACATTACATATTCACAAGCTTTACCAATTCATGGAAAGGATTCCTCTAGGATTTTGGTGGATCTCTTGAAGCACTAAGAACCTCAAGCAAAAATGTATGCAATCTTTGTACTTTAAAATTAAAGCATTTCAAccaggagcagtggctcatgcctgtagtcccagcgctttgggaggccaaggcaggatgattgcttgagccttggagtttgagactagtctggccaacatagccagaccccgtttctttaaaagaaaaaaaaaaacaattagctgcatgtggtggcacacatgtagtatcagctttgggaggcccagatgggaagattgcttgatctcaggaggttgaggctgcaatgagctatgatcatgccactgcactccagcctgggtgatagagcaagaccctgtctcaaaaaaaaaTTTTTTTAATAGATAAACATTCAGGCATTCCAAACTCCTAATGTATTGTCTACTATTAAGAATGCATGCTGGctgaggcaggagttcaagaccagcctggccaacgtgatgaaaccccatatctactaaaatacaaaaattagctgggccaggtggtgggtacctgtaatcccagctactcaggaggctgaggcaggagaatgtcttgaacccgggaggcagagattgcagtgagccgagatctcgccactgcattccagcctgggcaacagagtaagactccatctccaaaaaaaaaaaaaaaaaaaaaaaaaagaaTCTCTGGAATTTAACATTCCTTTAAACTTaaaaaataagaaaaaataaattaaaaaaaaTTAGAAGAATGCATGCTGGGGTCTGCTCAGTGATTCAcaaggcaggaaatctcttgagccaaggagtttgagaccaacctgggcaaagtggcaagaccctgtctctacaaaaaaattaaaaattagcagggcatggtggcacacttctgttgtcctagctacttgggaggctgaggcaggagagtcatttgggctcatgtgtttgaggttacactgagctttgatcacaccactgcgctccagactgggcaacagagcaagaccttatctcaagaaaacaaacaaaaagagaaTTCAGggctgggggcagtagctcacacctgtaatcccagcaccttgggaggccaaggcaggcagatgacttgaggttaggagtttaagaccagcctggccaacatagtgaaaccctgtctgtactaaaaatacaaaaattagctgggtgtggtggcaggcgcctttaatcccagctacttcggtggctgaggaaggagaatcgcttgagcccaggaggtagaggttgcagtgagccaagatcgtgacactactccagcctggacgacagagcgaaactctgtctgaaaaaaGTTCaggtgggaggatcccttgaggacaggagtttaagaccagcctgggcaatgtagcaagaccttgtctcttaaaaaaaaaaaaaaaAAGAATGCAAAAGCCATAGAACCTTTTCCTAGGAGAGAATGCTAGGAGGAAGGAGGGAAACAGTATATTTTAAGGTAAATAAGAAAGGCCTAATGCCCCGTGGTTAGATTTTTCTATCTACATATTGGAGATAAGTTTAAATTTTGTGTTAGTGTTTGGGTATTACTTCCTGCCAACGTGAAAAGTTAACCTTTCTAAGACAATCTCTACTAAGAATTTGGACTTTTTCAAGATTTTTGCCTACTTCTTTCAAAGAGATTGCAAAACGATTTTAACTCACTAAAGAACATTTTTCACCTCTTGATTGTCCAGTACAAGTGTAGTACAGTTCTTTTTTTATGTATCCTCCCTTTGTTTTTATAGACTGGAAGGTATCCAGAAATAAGGCATTCAGAAATGGAGGCACACATAGATGAAGGCAAAGGCCATTCCTATGAAGGCAGGTCTGTAGGCAGCTGGTTATTTGTTTTTCTCAGCCTCTCTTGGCATTCTACCTTCATCTGGAAAAAAATTTAAAAAGGAGGATACTTTATAGGTCCTGTCTCAAGTATCTGACTTCCCTGGGAAGCTTGATTCTCACATTCAAAATACATGGGGAGTTTGGTTCAGTTAAATTTTATCACACCAGAATTGTTGAAAAGCAATAAATTATTACTGTATAATTGGTGCCTGTTTGTTATCTTAG
Expression Profile(Data Source:Human Body Map ) Exosome Expression Profile(Data Source: NCBI GEO ) Structure Visualization No structure predicted!
DataSource: show detail information
See experimental data visualization in DMS dataset or PARS dataset
The following is the detail information of RNA secondary structure predicttion.
We use software RME We select two datasets respectively from PARS and DMS-seq to predict. However, it only predicted minority RNA secondary structures through dataset correction with the limitation of sequencing data coverage. So many transcripts only have RNA secondary structure information predicted without experimental data. If the transcript do have sequencing data covered, you can switch "DataSource" to see the RNA secondary structure predicted based on different datasets.
We use forna If you want more detail infomation of RNA secondary structure of this transcript, please visit website http://RNAex.ncrnalab.org/
Isoforms Data Sources
