Detail infomation of NONHSAT009289.2--NONCODE

Detail infomation of NONHSAT009289.2

General info
View in Genome Browser

NONCODE TRANSCRIPT ID	NONHSAT009289.2
NONCODE Gene ID	NONHSAG004197.3
Chromosome	chr1
Start Site	211382802
End Site	211435333
Strand	+
Exon Number	6
CNCI Score	-0.1433600
Length	3508
Assembly	hg38
Other transcript Versions	NONHSAT009289.1(old version)

Sequence

>NONHSAT009289.2

GTGACGTTCCCTACGCGGTCGGGCGTTGGGTTTCGCGGCGCTCGCCGCACTGGTTGTTCAGCACCTTCGGTCCGGTTGAGGTTGTCAAGTCGGACCAAACAGGTTGTTTCTCTGCAGTTTCCAACATGGCAGGGAGGTTTAATAGACATGGATAAGAAGTCCACTCACAGAAATCCTGAAGATGCCAGGGCTGGCAAATATGAAGGTAAACACAAACGAAAGAAAAGAAGAAAGCAAAACCAAAACCAGCACCGATCCCGACATAGATCAGTGACGTCTTTTTCTTCAGATGATCCTATGTTTCCTTCTTCCTCATCATCGTCTTCAGGAAGCCAGACAGATTCAAGTATTGAAGATGCTGCCAAGGGaaaaattaagaagaagagaagagagaaaacaaataaatgggaaaaaagaaaGGACAAAATATGAAACACCAAGAAAAAGAGAAGGAAAAAAAGGAGGAAACAACCACATATGTCACCTTTCCAAGAGGGACTGAAACTGGGCTGACCCTTTTGATTTCCAAGCTCAGCGTTTTGGTGTAAGGCGGCCAAAGAAGGATGCGGAGCCCAGCACTGTGAAGCCTACAAAAACATTGATGCGCTGGCTTGGGGATTTGAATTTGAACATCTTTCACACTAAGTTCAGACTCATGAAACCAATCTTCAGATGCTCTGTAAACCACATAATAAAGAGTTTGGAAATTATATTTTGTTTTTGAAGGCCCACGTGCAAAACTTGAGAGCCTCAAGTCCAAGCCAGTTGTGGCAATTCTAGCCTACTTTTTTTTTATATTCAAGTGTGTTGTAGGGAAGGAGGAGAATAAGTCTGCTTTCTTGAATATTATGCCTAATTAATTACGTATAAAATACTTTTACCAAAGTTCTATGCAAGGTAGAAGACTTACAGATGGCATGAAAAAGATAAAGTCTTTTCCATGtttttttttttttttttttttttttttgagacagagtttcactctggtcgcccaggctggagtgcagtgggccagtgtcgcctcacggcaacctccgcctcccaggttcaagtgcttctcctgcctcagcctcctgagtatctgggactacaggtccatgccaccacacccagctgattttgtatttctagtagagacatggtttcgctattttgtccaggctgctctcgaactcctgacctcaggttatctgttccccacggcatcccaaagtgctgggattacaggcgtgaactaccgtgcttggccTCTGTGTACttcttttttgttgttattgtttttgagatggagtttcactcttgtcatacaggctggagtgcagtggcgccatctcagctcactgcaacctctgtctcctgggttcaagcgattctcatgcctcagcctcccaagtagctgggattacaggtgtgcaccaccacgcccagctaatttttgtatttttagtaaagacagggtttcaccatgttggccaggctggtctcgaactcctaacctcaggtgatctacccacttcagtctcccaaagcgctgggattacaggtgtgagccaccgtacctggccCATGTACTTCTTACTTAGTTTTTCTTCCCGCGTCTTATGTTTACATTTGCAATTATGTCTTCTTCTTTCAACAAATATTACAGGTTTTCATAATCTCAAATATTTGTTTTTAGAGCATGATGTAATGTTCCTTTGCATTAGGTACACTGATTGTGGGTTTCCAACAAAAAGTTTTCAGGTCTAAAAATGATCAcatcatgcagtatacccaggaatcaaacctgcacatctatcccctaagtctaaaaatgaaagttgaaaaaaataaaaATTATATAAGAAAAAAATTATCACAGTGTTTTATAAAATAAGAAAGCAgaccacgcgtggtgactgaggcttgtaatcccagcactttaggaggccaaggcaggcggattgctttagctcaggagtttgaggccagcctggccgaaatggtgaaactctgtctctacaaacacacacacacacacacggtgaaactctgtctctacaaacacacacacacacacacacacacacacacaaatttagccaggcatggtggcacatgcctgtagtcccagctactcgggaggctgaggtgggaggattgcttgagcttgggaggcagaggctgcggtgagcgaagatcacaccactgcactccagcctgggcgccagagcaagactctgtctacaaaaaacaacaaacagaaaCAGCAATTTGCCAGGTAAGCCTTTTATGTTGCCTTTGATAGTTTTATAGATCCTTGGGATTTTTGCTCACTTAGGTTTATGATTGAATGTGTATCCCATCTAACTGTGTACTTGATATTTGCTTTTAAAACAAACTCCTGTTAGAAGTAAATGTTGAAAGAGAGGGCTAGGttgttttttttatattcattcagtcattgattcatttatttatttattcagggtcttggctgtgttacctaggctggagtgtgagagtatgatcatggctcactgcagcctagacctcttggattcaaatgatgctcccacttcagcctcccaagtagctgggaccacaggtgcacaccaccatgtccagctaatttttagatttttttgtagagacatggtctttctgtgttgccccggctggtctcgtactcctggcttcaagcaatggccccaccttggcctcccaaaatgaagattacaagtgtgagccactgtgcctaattgatttttttattGGAAATTTTGATACTGTTACGTTGTCACTGAGGCAGACAACTTAAAAATAATCTTGAGTATCATTCTGTGCCGATGTTAGAATTTAATATGCTGTTCGTAggccaggctcagtagctcacgcctgtaatctcagcactttgggacgccaaaagcaggaggatctcttgagcccccaggagtttgagacaagcctgggcagcataaagagacccccatctctaaaaaaaaaaaaatagaaaaattagccagacatgatgatgccaacctgtagtcctggctacttgggaagctgaggtaggaggatcgcttgagcccaggaatttgaggctgcagtgaactatgattacaccactgtactccagccagggtgacagagcaagaccctatctctaaaaCTATTTTTAAAAATAAAACAATATGTTGTTCATATTATCCTAATGTAGTGTTTTACTGAATAGAATTCCTTAAAGGATTCTTTTCCCCAAGGATATTAACTCAAGGTAAATTATAATAGGATTGCAGATAAATTAAGCATCTTTATCTTTGATTACAGAGATATTTAGCATATGACTATAGATAATTTCCCCTTCATATTTTCTTGGGCTTCTAGTATTTATGTATCAAGAAAATTATTTCCTTATGTTTGAAATGGTGACATTTCTGAAATGTACCAGCAGAGGATACAGGGATTTTTGTTTGTTTTTCATTTTCTTATTTACTGAAGAAATAAAGGCATTTTAGTTTATAAA

Expression Profile(Data Source:Human Body Map)

adipose	adrenal	brain	brain_R	breast	colon
1.99396e-06	0.0701718	0.145904	0.256548	2.33202e-06	7.05704e-06
foreskin	heart	heart_R	HLF_1	HLF_2	kidney
3.14301e-05	8.86135e-06	5.31824e-05	0.527743	0.0879508	8.70317e-07
liver	liver_R	lung	lymphNode	ovary	placenta_R
8.051e-06	5.0678e-05	6.69636e-06	7.46598e-06	1.69511e-06	0.418371
prostate	skeltalMuscle	testes	testes_R	thyroid	whiteBloodCell
0.341659	7.51698e-06	0.432068	1.65547	0.259022	6.37854e-06

Expression profile of NONHSAT009289 in Human tissues

Exosome Expression Profile(Data Source: NCBI GEO)

A431_cellLine (Squamous Cell Carcinoma Cell Line Exosomes)	BJ_cellLine (Foreskin Fibroblast Cell Line Exosomes)	HepG2_cellLine (Hepatocellular Carcinoma Cell Line Exosomes)	HUVEC_cellLine (Human Umbilical Vein Endothelial Cell Line Exosomes)	invasive_NFPAs (Invasive Non-functional Pituitary Adenomas Exosomes)
0	0	0	0	0
non-invasive_NFPAs (Non-invasive Non-functional Pituitary Adenomas Exosomes)	MCF7_cellLine (Human Breast Cancer Cell Line Exosomes)	MDA-MB-231_cellLine (Human Breast Cancer Cell Line Exosomes)	tuberculosis_patients_serum (Active Tuberculosis Patients Serum Exosomes)	normal_people_blood (Normal People Blood Exosomes)
0	0	0	0	0

Structure Visualization

DataSource: show detail information

See experimental data visualization in DMS dataset or PARS dataset

Isoforms

Transcript ID

Data Sources

Source Name	Old Id
ensembl	ENST00000423222
noncodeV3	n338512
PMID26117828	TCONS_00001604
noncodeV3	n407294
PMID22140575	mixed_Pred4519
PMID24108091	m121218_132759_00126_c100
PMID26117828	PNCT_HSA139783
NONCODEv4	NONHSAT009289
lncipedia	lnc-TRAF5-1-4_dup1
gencode	ENST00000423222.4
refseq	NR_026761
NAME	LINC00467