NONCODE TRANSCRIPT ID NONHSAT053396.1 NONCODE Gene ID NONHSAG021683.2 Chromosome chr17 Start Site 39029905 End Site 39053205 Strand + Exon Number 5 CNCI Score -0.1122304 Length 3580 Assembly hg38 Other transcript Versions NONHSAT053396.1 (old version)
Sequence
>NONHSAT053396.1 AAGCTCAGCATTCAGATTTGCCCAATGTCACTATTAGGCCTCCAGACATGCAGCTCACTATAGCAACAGAGCCTACTGCAGAGGTGGGAAGTTCTCCAATCCACCAGGAGGCTACAGCTCAGGTCTCAGGGCCAGGAAGTGATGTAGAACCTTCTGCCACCCAGCATGGTGGTGCACCTCTGCGTCCAGAGTCATCAGAAGAtgctggacctttagcaggtcaacaggagacttcagttcaatctccagaacctgttaatAATGAGAACCCCTCTCCAACCCAGCAGGAAGCTGCAGCTGAGCATCCACAGACCCCTGAGGAGGCTGAGTCTTCTCCAGCCCAGCAAGAGGCCCAACCTCAGACTCCAGATCCCCCTAAGGAGGTAGAACCTTCTCCAGTCCAGCAAGAGTTCCCAGCTGAGCCACCAGAGCCCCCTAAGGAGGTTGAACCATCTGCAACCCAGCAGCAAGCCTCAGGTCAGCCTCCAAAGTCCACTGAAGAGGTCAGTCCTCCACCACAGCAGGAGATACCAGCTCAGCCATCAGAGCCACCTGAGAAGGTCAAACCATCTCCAGTCCTACAGCAGACCCCAACTCAGCTTTTAGAGCCACCTAAAGAGGTAGAATCCTCTCCAGTTCAGCAGGCAGGCCCTGCTCAGTCCTCAGAGGCCCCTGTGGTCATAGAACCCTCTCGGACCCAGCAGATGGCCCCATCTTCACCTCCAGAGCTCCCTCAGGAAGTGGAACCATCTCTTAACTCAGCAGGGGGTTCCAGCTCAGACTCCAGAGCCCCCTATGGAGGCAGAACCTTCTCCAATCCAGCAGGAGGCCACAGTTCAGACTCCAGAGCCCCCTATGGAGGTAGAACCTTCAAGCCAGCAGCTGGTCCCAGCTCAGCATCCAGAGTCACCTAAGGAGGTTGCAGCTCAACCTCCAGTGCATGAGATGACAATTCCAATAGCAGGCCAGGACCAAGCCCAGATTCCAGTATCACCCAGTGTCACATTTCAACCTTTAGACCTGGGACTTACCGTCACTCCAAAATCCACTATGGAGGCTGAGTATTCTACAACCCCAAGGAAGACTACAGCTCCTCCAAAACACCCTGAGGTGATGCTTCCACCTCCTGACCAGGTTCAGGCTCAGCACACAAACCTAACAGGTCATAGTTCAACCTTTGCACCTGGAACTTACCACAACTCCGCAACCATGTTTTTTTCCTCCAACCATGAAGAACTCAACTCAGCTTCCAGAGACACCTACAGAGGTTGCAGCTCAACCTCCAGCTCATTATGAGGTGACAATTCCAACACCAGGTCAGGATCAAGCTCAGCATTCAACACTGTCCAGTGTCACAGTTCAGCCTTTGGGCCTGGGGCTTACCATCACTCCAGAATCCATGACAGAGGTTGAACTTTCTCCAACCATTCAGGAGACCCCAACTTAGCCTCCTAAGGAAGTTGTACCCCAACCTCCAGCATATCAAGGGGTAACAGTTCCAACACCAGGTCAGGATCAAGCTCAGCATCCAATGTCACCCAGCGTTACAGCTCAACCTTTGGACCTGGGACTTACCATCACTCCAGAACCCACTACAGAGGTTGAACATTCTACACCCCTGAAGAAGATTCCTCCCAAGCACCCTAAAGTGACACTTCCACATCCAGACCAGGTTCAGACTCTCCATTCGAACCTGACTCAAGTCACAGTTCAACCTTTGGATCTGGAACTTACCTTAACTCCAGAATCCACTATGGAGGTTGAACCTTTTCCAACCATGCAGAAGACCCCAACTCAGCCTCCAGAGCTACGTAAGGAGGTTGTAGCTCAACCTCCTGTGTATTATGAGACGTCCATGCCAACACGAGGCCAGGATCAAGCTCAGCATCCAACATCACCCAGAGTCACAGTTCAACCTTTGGATCTGGGGCTTACCATCACTCCAGAATCCATTACAAAGGTTGAACCGTCTACAGCCCTGATGACTACAGCTCCTCCTCCAGAGCACCTTGAGGTGACACTTCCACCGCCAGACAAGGGTCAGGCTCAGCATTCAAACCTGACTCAAGTCACAGTTCAACCTCTGGACCTGGAGCTTACCATAACTATAGAACCTACTATAGATGTTAAACCGTCTCCAACCACGGAGGAGACCTCAACTCAGTCTCCAGACCTGGGGCTTGCCATCACTCCAGAACCCACTACAGAGATTGGATATTCTACAGCCCTGGAGAAGACTATAGCTCCACGTCCAGACCAGGTTCAGACTCAGCATCGAAACCTGACTGAAGTCACAGGTCCACCTACTGAACTAGAACCTACTCAGGATTCACTGGTGCAGTCTGAAAATTACGCCCAAAATAAGGCTTTAACTGCACCAGAGGAACAGAAGGCCTCCACAAGCACCAACATATGTGATCTCTGTACCTGCGGAGATGAGACGCTGTCGTGTATCGATCTCAGCCCAAAGCAGAGGCTCCGCTGAGTGCCTGTGCCAGAGCCCAACACCTACAATGGCACCTTCACCATCTTAAATTTCCAAGGAAACTATATTTCTTACATTGGTGAAGATGTATGGAAAGCATACAGTTGGACTGAGAAACTGAATCTTGGTTGCAATTTACTGACAGAACTGAGCTTTGGAACCTTTCAGGCCTGGCACGGAATGCAGTTTTTACACAAGTTGTCCGGATTGATGGCTTATTTTAAAAAATTTTCTTACTCACTTCATTGGTTCTAATAATACAAGCTCCATAATTTTGGAAACTGAATGACTCTGCAATGTAGAAAGGCTATACCTTggcccggcgcggtggctcacgcctgtaatcccagcactttgagaggccgaggcgggcggatcacaggatGCCCGGGCATTTGTAGAGAACACTGCCAAAGAAAAAAAGGCTCAGGAGTCCAGCCCCAAGGGAGCTGGAACAGCCTCACATGGTGCAGGGGCCAAGAAGTTAGCCAAGAACTACTTCATTTCCCACCCCCCATCAAATGATGCCAAGGAGACTAACTCCGAAGAGGACTGATGTAAAATGCTTCTGCCCAGCATgggtgttcactgcacgagagcacttggccaagggggtgagtggggctgaaaatcctgctcaggctccatgctgagccACATACAAAGTCTCCCCGAGACATTGTGGGGCCCTTCTGGACAGACATGGAGAGCTTCTGAAAGTCCCGCATGCTTGGAATTATTTTCAAGACCCCAGGGTAGAATGGAGGTTGCACTATTCGGGCCGGCCACTCTCCTACTGGCTGACAGGATGCTGCCCGAGATGAAACAGGGTGTGTGTGCACCACGGAGTCAGTCCAAGACTCCTGTTCTCACTCAGGGATTCTTCATTTCTTCTTCCTATTGCCTCCACTTCATGTTATTTTCTTCCCTTCCCATTTACAAGTAAAACTGACCAGAGCCCCAGGAATAAATGGTTTTCTTGGCTTCCTCCTTGCTCCCATCTGGACCCAGTCCCCTGGTTCCTGTTGGTCATTTGCAAACCAAGAGGACCACAATAAACAAATCTCTATTTTTTTTTTAAATATTAAAGCATTC
Expression Profile(Data Source:Human Body Map ) Exosome Expression Profile(Data Source: NCBI GEO ) Structure Visualization No structure predicted!
DataSource: show detail information
See experimental data visualization in DMS dataset or PARS dataset
The following is the detail information of RNA secondary structure predicttion.
We use software RME We select two datasets respectively from PARS and DMS-seq to predict. However, it only predicted minority RNA secondary structures through dataset correction with the limitation of sequencing data coverage. So many transcripts only have RNA secondary structure information predicted without experimental data. If the transcript do have sequencing data covered, you can switch "DataSource" to see the RNA secondary structure predicted based on different datasets.
We use forna If you want more detail infomation of RNA secondary structure of this transcript, please visit website http://RNAex.ncrnalab.org/
Isoforms Data Sources
